Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0642 ATGGCGAACCTGCCTCAATCGCTATCCATGAATGCCCCCTTCGGAGGTCCGCCCTCTTCGGCGGCCAACCCCGCCGGAGCTCAGGTCAACAAGGAACGGAAGTTGGCGTCCGCCGAGAATTTGGTGCTCGAACTCAGCAATCCTGAACTTCGTGAAAACGCTCTTCTTGAACTCTCTAAGAAGAGAGAATTATTTCAAGATTTGGCTCCATTATTGTGGAATTCTTTTGGTACTATTGCTGCACTATTGCAGGAGATAGTTTCAATTTATCCTGTTCTATCACCACCAAATCTAACTCCAGCACAATCAAATCGGGTCTGCAATGCACTTGCCCTTCTCCAGTGTGTAGCTTCTCATTCAGAAACAAGGATGCTGTTCCTAAATGCCCACATACCCTTGTACCTGTACCCTTTCCTCAATACCAATAGCAAATCTAGGCCTTTTGAGTACTTGAGACTAACTAGCCTAGGTGTTATTGGTGCTTTGGTGAAGGTTGATGATACAGAAGTTATTAGTTTCCTTCTCTCAACAGAAATAATTCCGCTGTGCCTACGCACCATGGAGATGGGGAGTGAATTGTCAAAAACAGTTGCCACATTTATTGTTCAAAAAATTCTGTTGGATGATGTGGGCTTGGATTATATTTGTACTACGGCAGAGCGATTTTTTGCAGTAGGTCGAGTTTTGGGGAATATGGTCGCAGCACTTGCTGAGCAACAATCAACAAGGCTTCTTAAGCATATTATTCGATGTTATCTTCGATTATCAGACAACCCAAGGGCTTGTGATGCATTAAGAAATTGCCTTCCGGACATGTTAAAAGACGCCACTTTCAGTAGTTGTCTTCGTGAAGATCCAACAACGAGGAGGTGGTTGCAGCAGCTGCTTCACAATGTTGGGGGAAGCCGGGTTGCTGCATTTCAGGCGGGGGGAGGATTTGACCATATGCTGGTGAACTGA 960 0.4542 MANLPQSLSMNAPFGGPPSSAANPAGAQVNKERKLASAENLVLELSNPELRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHSETRMLFLNAHIPLYLYPFLNTNSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQQSTRLLKHIIRCYLRLSDNPRACDALRNCLPDMLKDATFSSCLREDPTTRRWLQQLLHNVGGSRVAAFQAGGGFDHMLVN* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0642 319 Gene3D - 30 300 IPR011989 -
Vvi19g0642 319 FunFam Cell differentiation protein RCD1 31 302 - -
Vvi19g0642 319 MobiDBLite consensus disorder prediction 1 16 - -
Vvi19g0642 319 SUPERFAMILY ARM repeat 43 296 IPR016024 -
Vvi19g0642 319 MobiDBLite consensus disorder prediction 1 29 - -
Vvi19g0642 319 PANTHER UNCHARACTERIZED 32 303 IPR007216 GO:0006402|GO:0030014
Vvi19g0642 319 Pfam Cell differentiation family, Rcd1-like 41 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0642 Vvi-Chr19 7005502 7044859 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Vvi19g0642 Rcd1 1.9e-129 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0642 K12606 - vvi:100265941 614.379