Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0632 ATGGACAATGGTGGTAGTAGTGGGGGCGGACGCCCACTCTCTGATAATCATTCTCATCCATCTGCCTTCTCCTTTTCCAAGCCTTTTAAGATGGATGGCGGCGGCGGCGGTGTTGTTGTTGGAGGAGGAGTTTCTTCGTTGGTCCCCAACCGGAGGATCAATGAGATGGACTTCTTTGCTCAGAAAGAAACAGCGAGGGTGGATGTCAAGAGGGAGACAACCGCACATGATGGGCTGGTGCAAGGTTTCCACATAAATACTGGGTTGAATCTTCACTTAGCGAGCGGTGGTAGCGAAAAATCTTCGGTGGATGGTGGAACATCACCTAGCAACAAGGAAAAGCTCAACATGAGTGATAAGATGGTAGGTCTACGGGCTGAGTTAGAGAATATGAACAAGGAAAATAAACAGTTGAGAGCCATGCTGAGTCAAGTCAACAATAACTACTCCGCCCTACAGATGCATGTTGTAACGCTGATGCAAAGGCAACACAATCGGAGAGCTGAAATCTCCCTAGCAAACGAGGTGAATACTGAAGGAAAAGTGGGAGAGAGGAACAGAAATGAAACCATCGTTCCAAGGCAATTCATGGATTTGGGTCGGGCGTCTATGGCCGAAAAGGATGAGTCATCACCATCTTGGTCGGGTTCCAGATCTCCTCAAACCAATGAAGATGCATCCAGGGAGTCAAGGAGGCGGAAGACTGGCAGTACTAGTAATGAAAACAAGGATGGAGGAAGAGAAGAGAGTTCAGACCAATCATTACAAGGCGGGCTTCCTAACAAAGTCCCTAAATTTAATTGTTCACAGAATGTCGAACAGGCCTCAGAAGCCATGTCCATGATGAGGAAAGCTCGGGTCTCAGTTCGAGCAAGATCGGAGGCATCCATGATCTCCGATGGATGCCAATGGAGAAAGTATGGACAAAAGATGGCGAAAGGAAACCCATGCCCTCGAGCTTATTATCGATGCACCATGGCAACTGCTTGTCCAGTTCGCAAACAAGTCCAGAGATCTGCAGAAGATCGGACCGTCCTCATAACAACTTATGAAGGCCATCACAACCATCCCCTACCTCCGGCTGCCATGGCGATGGCCTCGACCACATCAGCTGCTGCAACAATGCTACTTTCGGGATCAATGCCGAGCTCAGATGGGATAATGAGCTCGAGCTTTCATTCAAGGACTATGTTCCCATGCTCCCCAAGCTTGGCAACGATTTCAGCTTCAGCGCCCTTTCCCACTATTACATTAGATCTTACACACAGCCCGAACCTCTTACAGCACCAGAGGCCGAATGCCCAATTCCATGTCCCTTTCCAAAACCTTCCCCAGAATTTTGCTCCTGGGTCGCACGCTTTCAATCCAGTGCTTCACAGCCAATCCAAATTCTCCGCCCTTCAAAGCTCCCCAGAAATGCAGCCTCCTCAAGTAGGAACCGAGCAAGTGCTGAAGCCATCGTCATCATCCTCAGACACAGTAACTGCAGCAACGGCTGCCATCACCGCAGACCCGAACTTCACTGCAGCTCTAGTGGCAGCCATCACTTCCATTATTGGCAATGTTCATCCAAACAATAGTAGTAACAGTAGTACCAACACAAGAAGCACCAATGTCGACAATAATATTGGGAACTCAAATTTGGTAGGGAATTAA 1656 0.4861 MDNGGSSGGGRPLSDNHSHPSAFSFSKPFKMDGGGGGVVVGGGVSSLVPNRRINEMDFFAQKETARVDVKRETTAHDGLVQGFHINTGLNLHLASGGSEKSSVDGGTSPSNKEKLNMSDKMVGLRAELENMNKENKQLRAMLSQVNNNYSALQMHVVTLMQRQHNRRAEISLANEVNTEGKVGERNRNETIVPRQFMDLGRASMAEKDESSPSWSGSRSPQTNEDASRESRRRKTGSTSNENKDGGREESSDQSLQGGLPNKVPKFNCSQNVEQASEAMSMMRKARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMATACPVRKQVQRSAEDRTVLITTYEGHHNHPLPPAAMAMASTTSAAATMLLSGSMPSSDGIMSSSFHSRTMFPCSPSLATISASAPFPTITLDLTHSPNLLQHQRPNAQFHVPFQNLPQNFAPGSHAFNPVLHSQSKFSALQSSPEMQPPQVGTEQVLKPSSSSSDTVTAATAAITADPNFTAALVAAITSIIGNVHPNNSSNSSTNTRSTNVDNNIGNSNLVGN* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0632 551 MobiDBLite consensus disorder prediction 208 223 - -
Vvi19g0632 551 SUPERFAMILY WRKY DNA-binding domain 291 359 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi19g0632 551 SMART WRKY_cls 298 358 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g0632 551 MobiDBLite consensus disorder prediction 521 551 - -
Vvi19g0632 551 Gene3D WRKY domain 282 360 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi19g0632 551 MobiDBLite consensus disorder prediction 464 490 - -
Vvi19g0632 551 Pfam WRKY DNA -binding domain 300 357 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g0632 551 ProSiteProfiles WRKY domain profile. 293 359 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g0632 551 MobiDBLite consensus disorder prediction 203 267 - -
Vvi19g0632 551 Coils Coil 114 148 - -
Vvi19g0632 551 MobiDBLite consensus disorder prediction 224 250 - -
Vvi19g0632 551 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 104 531 IPR044810 GO:0003700
Vvi19g0632 551 MobiDBLite consensus disorder prediction 251 267 - -
Vvi19g0632 551 MobiDBLite consensus disorder prediction 1 23 - -
Vvi19g0632 551 MobiDBLite consensus disorder prediction 1 28 - -
Vvi19g0632 551 MobiDBLite consensus disorder prediction 94 114 - -
Vvi19g0632 551 FunFam probable WRKY transcription factor 31 283 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0632 Vvi-Chr19 6882629 6884897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0632 55 519 WRKY Transcription Factor Family AT1G62300 48.049 3.30e-111 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi19g0632 WRKY 7.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0632 - - vvi:100245129 1020.76