Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0630 ATGGATTGGACCAGAGGACCCACCATCGGCCGTGGCGCCTCCGCCACCATCTCCCTGGCCATCGTCTCTACCTCAGGGGAGCTCTTTGCTGTCAAGTCGACGGAGCTCTCCCGCTCCAAGTTGTTGCAGAGGGAGCAGTCTTTTCTTTCCCAGTTGAGCTCTGAGCGCATAGTTAAGTACTTGGGATCCAACACTACATGTGAAGGTGATACGATGTTGTACAATGTATTCATGGAGTATGTGCCCGGCGGCGCGCTGTCGGATGAGATTCGGCGGCGTGGGAATAGGCTTGATGAGGATTGGATTCGGTTGTATACGCGGCAGATAGTTCTGGGGTTGGAGTACCTTCAGTTCAATGGATTGGTGCATTGTGATATCAAGAGTGAGAATGTTTTGATAAGAGAAGATGGTGCGGTGATTGCTGATTTGGGTTGTGCTAAATCGGTTCATGGCAATGGAGGTGGGTCCGTGTTTTCCGGGACACCCGTGTTTATGGCGCCGGAGGTGGCTCGTGGCGAAGAGCAGGGGTTTCCAGCTGATGTTTGGGCTCTTGGGTGCACAGTGATTGAGATGGCAACTGGCCGCAATCCTTGGCCGGAGGTAGATGACCCAGTGTCCGCGCTTTACAGAATTGGGTTCTCCGGCGATGTTCCGGAGTTTCCGATGTGGTTGTCAGAAAATGGGAGGGACTTTTTGGACAAGTGCCTGAGGAGAAACCCAAGAGAGAGATGGACAGCCAAAGAGCTTCTTGAGCATCCATTTCTTGAGCCTAATTCAAAGCAATTGAAAGAGTTTCCTGTGAAATCCCCCACAAGTGTGTTGGATGATCAAGGCTTTTGGGACTCGCTGGAGGCGCCGGTGACTCCCTCCGTTCTGATGCACATAGGTTCTTCATCAAATTCTCCAGCTGAGAGGATCCAGAGATTGAACGAGGGTGCCTTGTCTTCGGGTTCAAATCTACCCAACTGGACTTGGGACGAAGATTGGGTCACAGTTCGAAGCAACTACATTGAAGAAAGCGCGAGATTTTCTGATAACACCACAACTACATTGGTCATGGCTTCATTTGTTCATGAAGAAGAGCCTGAAAATTTAGTTTTGGCCCAATCCAAGCTTGAATCCCCAGCCCCAGGCTTGAAATGGACTCGGGTTCTGGGCCATGGCCTAGGCCCTTTTTCACTACCCACGAAAAGGCGGTCGCTTCGGTTTTCGTTGAATGTCTCCCCTTCTACACTGACATTTTTTTTTTCAGTCAGAGACACAGAAAACACTGCTGCTGTGAGCGACTGTGCGGGAGCATTGAGCTTCAATGGAGGCGGCGCCGCCACTTGCTTCCTCACAATCTCGCTTCTTCTCATCTTCCTTCTCCTCCTCTTCTTCTCCTTCATCTACACCGTTTATTCTTCACCGTAA 1413 0.5081 MDWTRGPTIGRGASATISLAIVSTSGELFAVKSTELSRSKLLQREQSFLSQLSSERIVKYLGSNTTCEGDTMLYNVFMEYVPGGALSDEIRRRGNRLDEDWIRLYTRQIVLGLEYLQFNGLVHCDIKSENVLIREDGAVIADLGCAKSVHGNGGGSVFSGTPVFMAPEVARGEEQGFPADVWALGCTVIEMATGRNPWPEVDDPVSALYRIGFSGDVPEFPMWLSENGRDFLDKCLRRNPRERWTAKELLEHPFLEPNSKQLKEFPVKSPTSVLDDQGFWDSLEAPVTPSVLMHIGSSSNSPAERIQRLNEGALSSGSNLPNWTWDEDWVTVRSNYIEESARFSDNTTTTLVMASFVHEEEPENLVLAQSKLESPAPGLKWTRVLGHGLGPFSLPTKRRSLRFSLNVSPSTLTFFFSVRDTENTAAVSDCAGALSFNGGGAATCFLTISLLLIFLLLLFFSFIYTVYSSP* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0630 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Vvi19g0630 470 Pfam Protein kinase domain 6 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0630 470 SUPERFAMILY Protein kinase-like (PK-like) 2 316 IPR011009 -
Vvi19g0630 470 FunFam Mitogen-activated protein kinase kinase kinase 17 2 305 - -
Vvi19g0630 470 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 352 - -
Vvi19g0630 470 SMART serkin_6 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0630 470 ProSiteProfiles Protein kinase domain profile. 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0630 470 Gene3D Transferase(Phosphotransferase) domain 1 2 289 - -
Vvi19g0630 470 CDD STKc_MAPKKK 2 255 - -
Vvi19g0630 470 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0630 Vvi-Chr19 6858649 6863702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0630 1 363 MAP Kinase Kinase Kinase AT5G55090 50.794 1.66e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi19g0630 Pkinase 6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0630 K20716 - vvi:100262461 748.429