Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0611 ATGGTGGCCAACAGCAGCGGTGCCGGAGTTGAAGACCGGCCGGAGAATGGTGGTAGCGACGCCGGCGGTGTGGCGTTGAAGAAGGGGCCATGGACGGCAGCGGAGGACGCTATATTGGTGGAGTACGTGACGAAGCACGGCGAGGGCAACTGGAACGCTGTTCAGAAGAATTCGGGGCTGGCTCGCTGTGGGAAGAGCTGCAGATTAAGGTGGGCGAACCATCTGAGGCCCAATCTGAAGAAGGGTTCCTTCTCTGCTGAGGAGGAGAGGGTGATTCTCGAGCTGCATGCCAAATTGGGCAACAAATGGGCTCGCATGGCCGCTCAGTTGCCCGGGCGAACAGACAACGAGATAAAAAACTACTGGAACACTAGAATTAAGAGGCGCCTTCGCCAAGGCCTGCCTGTCTACCCACAAGAAGTTCAAAATCAGAGCAATACCGTCAACCAGCCCAACTTCCAAAACCCCCCATACCCACAATCTCCCTGTCCTCCATCTCAAACTCTCTTCTCCTCATCGCCCCAATTCAAACCCGCCTTCAGTTCTTCTCTATCCCTCTTCGACCCAATCACTACTCTTTCAGCCCACCAAACTTCCCCAATTCTCACACCCCCTTATCAACGCTACAAGCGATCGGGTGACACTGGACCTGATTTCCCTCTTCCATTCTCACAGGCATCATTGCCATCTCCTCTTCCGAGTTCATCTCTGCCCAACCAATTCTCTCACATTTCCCCCCTCCAATTGAATCCAGTGACTTTCTGTCAGAATTCACTGCCAATTCTGCAAACCCAATTCAAATTTGACCAAATGGTCCCACCTGTCTTGGATTTTTCAATAAATCCAGAGCTCCCTTCAAGCCAATTTTCCAAAAAAACACACCCGTATACTGCCGACAATATGAAGATCAACTCAAGTAGCAGCAATTGTGGGTTATTGGATGAGCTGATAGGTCAAGCTCAGGCAATGGTGTGCAATGACTCCTCCAGGAGGCAAGCTTCATTCGGTTCACAAGAAGAGAAGCATATGCTCAATGACTTTGAACTGTTTTTAAGTGGAAGCAGTACAAATCCTCCATTTGTATCTGGTCCTCAGTGGGCTGATTCAACCTCTCTTCAGCCCTCTACCGGTAAGTTATTAGTTTGA 1146 0.5026 MVANSSGAGVEDRPENGGSDAGGVALKKGPWTAAEDAILVEYVTKHGEGNWNAVQKNSGLARCGKSCRLRWANHLRPNLKKGSFSAEEERVILELHAKLGNKWARMAAQLPGRTDNEIKNYWNTRIKRRLRQGLPVYPQEVQNQSNTVNQPNFQNPPYPQSPCPPSQTLFSSSPQFKPAFSSSLSLFDPITTLSAHQTSPILTPPYQRYKRSGDTGPDFPLPFSQASLPSPLPSSSLPNQFSHISPLQLNPVTFCQNSLPILQTQFKFDQMVPPVLDFSINPELPSSQFSKKTHPYTADNMKINSSSSNCGLLDELIGQAQAMVCNDSSRRQASFGSQEEKHMLNDFELFLSGSSTNPPFVSGPQWADSTSLQPSTGKLLV* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0611 381 MobiDBLite consensus disorder prediction 361 381 - -
Vvi19g0611 381 FunFam Transcription factor GAMYB 83 129 - -
Vvi19g0611 381 CDD SANT 83 124 IPR001005 -
Vvi19g0611 381 FunFam MYB-related transcription factor 27 80 - -
Vvi19g0611 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
Vvi19g0611 381 Pfam Myb-like DNA-binding domain 31 89 - -
Vvi19g0611 381 Gene3D - 83 130 - -
Vvi19g0611 381 MobiDBLite consensus disorder prediction 146 173 - -
Vvi19g0611 381 SMART sant 80 128 IPR001005 -
Vvi19g0611 381 SMART sant 27 77 IPR001005 -
Vvi19g0611 381 MobiDBLite consensus disorder prediction 198 225 - -
Vvi19g0611 381 SUPERFAMILY Homeodomain-like 26 122 IPR009057 -
Vvi19g0611 381 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Vvi19g0611 381 MobiDBLite consensus disorder prediction 1 26 - -
Vvi19g0611 381 Gene3D - 27 80 - -
Vvi19g0611 381 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Vvi19g0611 381 CDD SANT 30 75 IPR001005 -
Vvi19g0611 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 75 IPR017930 -
Vvi19g0611 381 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 12 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0611 Vvi-Chr19 6693443 6695136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0611 23 149 MYB Transcription Factor Family AT2G32460 78.740 7.44e-72 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi19g0611 Myb_DNA-bind_6 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0611 K09422 - vvi:100262343 728.783