Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0600 ATGAAGCTGGTCGCCGCCGCCAAGGTCCGGCGAGCCCAAGAAGCCGTCATTAACGGCAGACCTTTCTCCAATACCCTAGTGGAAGTCCTCCACTACATCAACGAACAGCTCCAAGACGACGGCGTTTCAGTCCCCTTAACAGAGGTCAGGGCTGTGAAGAGGGTTGCCCTCGTGGTGATCACCGGTGATCGCGGCCTCTGTGGCTCTCTTAACGCCGGAATCCTCAAAATGGCTGAGTCCCGTATCGCAGAATTGACAGATCTTGGATTGGACTGCACTGTGATCAGCGTCGGACGAAAGGGTAATTCGTATTTTCGTCGCCGGAGTCGTGCTCCGGTGGTTTCGGTGGATCGTTTTGTTGAAGGAGGAGGTCGGTTTCCGACCGCAAAAGAGGCTCAGGTCATTGCGGATGACGTTTTCTCGCTGTTTGTGAGTGAAGAGGTCGATAAAGTGGAGCTTTTGTATACGAAATTTGTGTCGTTTGTGGAGTCCGCGACGGTGATTCAAACTCTGCTGCCATTATCGATGAAAGGAGAGGTCTTTGATCAGAACGGCAACTGTGTTGATGCAATGGAAGATGAGTTGTTTAGGTTGACCACAAAGGAAGGGAAACTGAGCGTGGAGAGGGATAAGGTCCAGTCGGAGAAGGTTGAATTTTCCCCATTTTTGGAATTTGAACAAGACCCAGCTCAGATTCTCGATGCCTTGATGCCTCTGTATTTGAACAGCCAGATTCTGAGGGCATTGCAGGAGTCACTGGCGAGTGAGCTCGCTGCAAGGATGTGTGCCATGAGTAATGCAACAGATAACGCGGTGGAGCTGACGAAGACTCTCTCCCTTGCCTATAATCGGAAGAGGCAGGCCAAAATCACAGGTGAAATATTGGAGATCGTCGCTGGAGCTGATGCTCTTTCTGAACAGCCATAA 927 0.5102 MKLVAAAKVRRAQEAVINGRPFSNTLVEVLHYINEQLQDDGVSVPLTEVRAVKRVALVVITGDRGLCGSLNAGILKMAESRIAELTDLGLDCTVISVGRKGNSYFRRRSRAPVVSVDRFVEGGGRFPTAKEAQVIADDVFSLFVSEEVDKVELLYTKFVSFVESATVIQTLLPLSMKGEVFDQNGNCVDAMEDELFRLTTKEGKLSVERDKVQSEKVEFSPFLEFEQDPAQILDALMPLYLNSQILRALQESLASELAARMCAMSNATDNAVELTKTLSLAYNRKRQAKITGEILEIVAGADALSEQP* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0600 308 Gene3D ATP synthase, gamma subunit, helix hairpin domain 1 51 - -
Vvi19g0600 308 CDD F1-ATPase_gamma 1 301 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi19g0600 308 FunFam ATP synthase gamma chain 45 175 - -
Vvi19g0600 308 PANTHER ATP SYNTHASE GAMMA CHAIN 1 304 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi19g0600 308 ProSitePatterns ATP synthase gamma subunit signature. 290 303 IPR023632 -
Vvi19g0600 308 Hamap ATP synthase gamma chain [atpG]. 1 304 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi19g0600 308 Gene3D - 52 185 - -
Vvi19g0600 308 Pfam ATP synthase 1 304 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi19g0600 308 NCBIfam ATP synthase F1 subunit gamma 1 304 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi19g0600 308 PRINTS ATP synthase gamma subunit signature 149 166 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi19g0600 308 PRINTS ATP synthase gamma subunit signature 251 270 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi19g0600 308 PRINTS ATP synthase gamma subunit signature 282 303 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi19g0600 308 PRINTS ATP synthase gamma subunit signature 52 71 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi19g0600 308 FunFam ATP synthase gamma chain, chloroplastic 1 46 - -
Vvi19g0600 308 Gene3D ATP synthase, gamma subunit, helix hairpin domain 203 304 - -
Vvi19g0600 308 FunFam ATP synthase gamma chain, chloroplastic 201 304 - -
Vvi19g0600 308 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 1 304 IPR035968 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0600 Vvi-Chr19 6626104 6627030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0600 1 306 Primary Pumps ATPases AT1G15700 70.261 3.74e-154 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0600 K02115 - vvi:100258958 579.326