Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0593 ATGGGTATTTGTCTAAGCAAAGGCAAGAGGGGTTCAGAGCCAGCATATAATGGGTATGGATCAGGAGCTGTTGCTGGAGGCGTTTATGATAGAATCCAAGAACGCCCTGCTGCAGTTCAACAACCGCCCCACCAATTACCCGAAAAGCGTGTACCAGCGGCACAGCCGCCGATGAAGCCGCCCACGGTGGCCCTAAGTCCCAAGCCTGTTCACAGGCCTGATACCATTCTTGGTAAGTCTTTTGAAGATGTTAAATTACACTATACTATTGGTAAGGAACTGGGTAGAGGTCAATTTGGGGTTACATATCTTTGTACTGAGAATTCAACTGGATTGCAATATGCCTGCAAGTCTATATCCAAAAGGAAGCTTGTTACTAAGAATGATAAGGAGGATATAAGGCGAGAAATTCAGATTATGCAGGATTTGAGTGGGCAGCCCAATATTGTTGAGTTCAAGGGTGCTTATGAGGATAGGCTGTCTGTGCATCTTGTTATGGAACTATGTGCAGGCGGTGAGCTATTTGATCGGATTATCGCCAAGGGGCATTATAGCGAAAGGGCTGCTGCTTCCATATGCAGGGCTATTGTGAATGTGGTACACATTTGCCATTTTATGGGTGTGATGCATCGTGATCTCAAGCCTGAGAATTTCTTGCTGTCTAGCAAGGGTGAAAATGCGCTTTTGAAGGCAACAGATTTTGGATTGTCGGTTTTCATTGAAGAAGGGAAGGTGTATCGAGATATCGTTGGGAGTGCCTACTATGTAGCTCCTGAAGTCTTACGGCGTAGATATGGAAAGGAAATAGATATTTGGAGTGCAGGAGTTATCTTGTATATTTTACTGAGTGGCGTACCTCCCTTTTGGGCCGAAACGGAGAAGGGTATATTTGATGCTATATTGCAAGGACATATTGACTTTGAAACTTCACCATGGCCATCTATATCAAGCAGTGCCAAGGACCTAGTTCGGAAGATGCTGACACAGGACCCACAGAAACGGATCACTTCTGCTCAGGTTCTAGAGCACCCATGGATTAAAGAAGATGGAGAAGCATCAGACAAGCCAATAGACAGTGCAGTCCTTTCCAGGATGAAGCAATTCAGAGCAATGAACAAACTCAAGAAACTTGCACTGAAGGTCATTGCGGAAAATCTTTCCGAAGAAGAAATCCAAGGGCTGAAAGCAATGTTTACAAACATGGATACTGATAAAAGTGGTACTATAACCTATGAAGAACTGAAGTCAGGATTGGCTCGACTTGGGTCAAAACTAACAGAGGCTGAAGTCCAGCAACTCATGGAAGCTGCTGATGTGGATGGAAATGGCACAATTGACTACATTGAGTTCATCACTGCAACAGTCAATAGACACAAGCTCGAAAGAGATGAACATCTGTTCAAAGCCTTTCAGTATTTTGACAAGGATAGTAGCGGGTTCATCACAAGAGATGAGCTAAAAGCAGCCATGAAAGAACATGGAATGGGAGATGATGATACCATTGCTGAAATCATATCTGAAGTGGATACAGACAATGATGATAAGATCAACTATGGAGAATTCTGCTCAATGATGAGAGGTGGAACCCAACAGGGATTGAAGGTTTTTTAG 1611 0.4376 MGICLSKGKRGSEPAYNGYGSGAVAGGVYDRIQERPAAVQQPPHQLPEKRVPAAQPPMKPPTVALSPKPVHRPDTILGKSFEDVKLHYTIGKELGRGQFGVTYLCTENSTGLQYACKSISKRKLVTKNDKEDIRREIQIMQDLSGQPNIVEFKGAYEDRLSVHLVMELCAGGELFDRIIAKGHYSERAAASICRAIVNVVHICHFMGVMHRDLKPENFLLSSKGENALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRYGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILQGHIDFETSPWPSISSSAKDLVRKMLTQDPQKRITSAQVLEHPWIKEDGEASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNMDTDKSGTITYEELKSGLARLGSKLTEAEVQQLMEAADVDGNGTIDYIEFITATVNRHKLERDEHLFKAFQYFDKDSSGFITRDELKAAMKEHGMGDDDTIAEIISEVDTDNDDKINYGEFCSMMRGGTQQGLKVF* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0593 536 Gene3D - 355 527 - -
Vvi19g0593 536 ProSiteProfiles EF-hand calcium-binding domain profile. 461 496 IPR002048 GO:0005509
Vvi19g0593 536 CDD STKc_CAMK 87 345 - -
Vvi19g0593 536 ProSitePatterns EF-hand calcium-binding domain. 402 414 IPR018247 -
Vvi19g0593 536 SUPERFAMILY EF-hand 385 525 IPR011992 -
Vvi19g0593 536 PANTHER SERINE/THREONINE-PROTEIN KINASE 83 521 - -
Vvi19g0593 536 CDD EFh 394 453 IPR002048 GO:0005509
Vvi19g0593 536 ProSiteProfiles EF-hand calcium-binding domain profile. 497 531 IPR002048 GO:0005509
Vvi19g0593 536 CDD EFh 465 526 IPR002048 GO:0005509
Vvi19g0593 536 Gene3D Phosphorylase Kinase; domain 1 89 173 - -
Vvi19g0593 536 ProSitePatterns EF-hand calcium-binding domain. 509 521 IPR018247 -
Vvi19g0593 536 FunFam Calcium-dependent protein kinase 1 354 529 - -
Vvi19g0593 536 Gene3D Transferase(Phosphotransferase) domain 1 174 354 - -
Vvi19g0593 536 SMART efh_1 465 493 IPR002048 GO:0005509
Vvi19g0593 536 SMART efh_1 500 528 IPR002048 GO:0005509
Vvi19g0593 536 SMART efh_1 393 421 IPR002048 GO:0005509
Vvi19g0593 536 SMART efh_1 429 457 IPR002048 GO:0005509
Vvi19g0593 536 MobiDBLite consensus disorder prediction 49 67 - -
Vvi19g0593 536 FunFam calcium-dependent protein kinase 1 174 353 - -
Vvi19g0593 536 Pfam EF-hand domain pair 464 526 IPR002048 GO:0005509
Vvi19g0593 536 Pfam EF-hand domain pair 394 454 IPR002048 GO:0005509
Vvi19g0593 536 ProSiteProfiles EF-hand calcium-binding domain profile. 425 460 IPR002048 GO:0005509
Vvi19g0593 536 FunFam Calcium-dependent protein kinase 1 90 173 - -
Vvi19g0593 536 Pfam Protein kinase domain 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0593 536 ProSiteProfiles Protein kinase domain profile. 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0593 536 SUPERFAMILY Protein kinase-like (PK-like) 87 353 IPR011009 -
Vvi19g0593 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vvi19g0593 536 ProSitePatterns EF-hand calcium-binding domain. 438 450 IPR018247 -
Vvi19g0593 536 ProSiteProfiles EF-hand calcium-binding domain profile. 389 424 IPR002048 GO:0005509
Vvi19g0593 536 Coils Coil 411 431 - -
Vvi19g0593 536 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Vvi19g0593 536 SMART serkin_6 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0593 536 MobiDBLite consensus disorder prediction 36 70 - -
Vvi19g0593 536 ProSitePatterns EF-hand calcium-binding domain. 474 486 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0593 Vvi-Chr19 6574853 6578876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0593 1 531 EF-hand Containing Proteins AT3G20410 73.761 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi19g0593 Pkinase 7.5e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0593 K13412 - vvi:100243573 1061.98