Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0592 ATGAAGGGGTGCTTTTCCTGCCTAGAAAACATGGTTTTGAGGTGTAGAGAGGCTGTTTCGTTCCGGGTCTTCTCCCAAACGAGGGATTCTGGAAATGGGTTGGTGTTCAGAGTGATGAAGAGCGCTGTCCTCGCTGCCTTCACCTGCATTTTTGCCCTAGGAGGAGCAGTCGTGGGTACAATCACAGGAGCCATTAAAGGCCAAACCACAGAAACCGGCTTCTTTCGTGGGTCCGGAATAGGTGCGGTGACAGGGGCCATAACAGCCCTTCAGCTGCTTGAATCAGTCGCTGCTGGCGAGTCATTGTCTAAGGCAGCTTTGTTATGTAGCCTAGTGAATGGGAAGGTGTTCATGGAATGGGTGAGTCCTGCAGTGCTAAAAGCTTATCAATGGCAAATTAGCACATTGGAAACAAATTATGGAGAGACTGAGGACTTTTACAACATCAGTGGAGCCAAAGGGCTGCCTCATAATTTCATTGAAAAGCTTCCCAAATCAAACTTTTGCCATAGCAATGCAGAAATGTATAATGAAATCAGTTGTACCATTTGCTTGCAGGATTTCAAGGATGGAGAGATGACAAGAGGGCTTCCAAGTTGCAGGCACTACTTTCATATGGAATGTGTAGATCAATGGCTAACCCTACATGGGTCTTGCCCCATGTGTAGAAAAGATGTTTGTATGGACACTTGA 693 0.4646 MKGCFSCLENMVLRCREAVSFRVFSQTRDSGNGLVFRVMKSAVLAAFTCIFALGGAVVGTITGAIKGQTTETGFFRGSGIGAVTGAITALQLLESVAAGESLSKAALLCSLVNGKVFMEWVSPAVLKAYQWQISTLETNYGETEDFYNISGAKGLPHNFIEKLPKSNFCHSNAEMYNEISCTICLQDFKDGEMTRGLPSCRHYFHMECVDQWLTLHGSCPMCRKDVCMDT* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0592 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 228 IPR013083 -
Vvi19g0592 230 Pfam Ring finger domain 180 223 IPR001841 -
Vvi19g0592 230 ProSiteProfiles Zinc finger RING-type profile. 181 223 IPR001841 -
Vvi19g0592 230 SMART ring_2 181 222 IPR001841 -
Vvi19g0592 230 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 27 225 IPR044523 -
Vvi19g0592 230 SUPERFAMILY RING/U-box 171 229 - -
Vvi19g0592 230 CDD RING-H2_EL5-like 180 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0592 Vvi-Chr19 6551636 6553149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0592 23 226 C3H Transcription Factor Family AT5G66070 35.681 1.63e-48 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0592 - - vvi:100265899 476.092