Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0590 ATGGAAGGAATCGTAGTTAGAAGAGTTATTCCCTCAGACAACAGTTGCCTTTTCAATGCTGTTGGGTATGTCATGGAGCATGACAAAAATAAAGCTGCATATTTGAGACAGGTTATAGCTGCAATAGTGCAAAGCGATGCAACAAAGTATTCTGAAGCATTTCTTGAAAAGCCAAATGAGGAATATTGTGCTTGGATTCTCAACCCTGAGAAATGGGGAGGTGCGATTGAGCTTTCAATATTAGCAGATTATTATGGCCGGGAAATTGCAGCATACGATATCCAAACTGGCCGATGTGATGTGTATGGTCAGGAGGCAGGTTATGATGAAAGGGTTATGCTGATCTATGATGGACTGCACTATGATGCCTTGGCTATGTCTCCATTTGATGGTGCTCCAGAAGAGTTTGATCAGACTGTATTTACAGTACAAACAGACAGGGCCATTGGTCCAATCGAGGAACTTGCCCTTAACCTTGTTAAGGAACAACAAAGGAAAAGGAGATTTACCGACACAACCAACTTCACATTGCGGTGTGGTGTATGCCAAATTGGAGTCATTGGCCAGAAGGAGGCTATGGAGCATGCCCGAGCAACAGGTCATGTCAACTTTCAAGAATACAGATGA 627 0.4306 MEGIVVRRVIPSDNSCLFNAVGYVMEHDKNKAAYLRQVIAAIVQSDATKYSEAFLEKPNEEYCAWILNPEKWGGAIELSILADYYGREIAAYDIQTGRCDVYGQEAGYDERVMLIYDGLHYDALAMSPFDGAPEEFDQTVFTVQTDRAIGPIEELALNLVKEQQRKRRFTDTTNFTLRCGVCQIGVIGQKEAMEHARATGHVNFQEYR* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0590 208 ProSiteProfiles OTU domain profile. 5 127 IPR003323 -
Vvi19g0590 208 Pfam OTU-like cysteine protease 12 116 IPR003323 -
Vvi19g0590 208 SUPERFAMILY Cysteine proteinases 8 124 IPR038765 -
Vvi19g0590 208 Gene3D - 1 173 - -
Vvi19g0590 208 FunFam ubiquitin thioesterase OTU1 1 173 - -
Vvi19g0590 208 CDD OTU_plant_OTU1_2-like 3 166 - -
Vvi19g0590 208 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 5 206 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0590 1 208 C2H2 Transcription Factor Family AT1G50670 80.769 5.22e-128 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0590 K13719 - vvi:100260612 426.402