Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0581 ATGCAACCGGCACCTATGGATCAGCAGCAGCCGCCGCAGTACCAGCAGCCCCCGCCACAGCAGCAGTGGATGATGATGCCGCCTCCGCAGCAGCAGCAACAGACGCAGCCCCCGCCGGCTTGGGCGCAACAGGCGCCAGTTCCGCCGCCCCAGGCCCAGCCCCAGATGGCGCCGCCACCCCAGCAGCAGCAGTATGTGGCCGCGCCGCAGGCGAGCAATCCCGAAGAGATTCGGTCGCTGTGGATCGGAGATTTGCAGCCGTGGATGGAAGAGAACTATCTGTGGGGATGTTTCTCTCAGACCGGAGAGGTGGTTTCAGTGAAGGTTATCCGAAATAAGCAAACTGGCCAATGTGAGGGCTATGGCTTTATTGAATTGGCTACTCGTGCCGCAGCCGAAAGGATTCTGCAGACTTACAATGGCACATTGATGCCAAATTCTGAACAGAACTTCCGACTGAACTGGGCCACTCTTGGTGCTGGTGAGAGACGTGCAGATGACACTCCTGACTATACTATCTTTGTTGGAGATTTGGCTTCTGATGTGACAGATTACGTGTTACAAGAAACATTCAGAGGCCACTATCCATCGGTTAAGGGTGCAAAGGTGGTCACTGATAGGACCACTGGGCGTTCTAAGGGTTACGGGTTTGTGAGGTTTGGAGATGAAGGTGAACAACTGCGTGCGATGAATGAAATGAATGGAATGTTCTGTTCAACCAGACCCATGCGAATTGGCCCTGCTGCTACCAAGAAACCTGTTGGTGGTCAGCAATTCCAGAAAGCTTCTTTTCAGAATACTCAAGGAAATCAGGGTGAGAGTGATCCAAATAACACAACAATATTTGTTGGTGGTTTGGACTCCAATGTTACTGATGACTATTTGAGACAAGTGTTTAGCCAATATGGTGAATTGGTTCATGTGAAAATACCAGTAGGCAAGCGCTGTGGGTTTGTTCAATTCGCTAATAGAGCTTGTGCTGAGCAAGCTTTAGCTGGGTTAAATGGTACTCAATTAGGAGCACAGAGTATTCGTCTTTCATGGGGGCGTAGTCCTTCGAACAAACAGGCCCAGCCAGATCAGGCCCAGTGGAATGGTGGATATTATGGATATGCTCAAGGATATGAGGCATATGGGTATGCGCCACCTCCTCAAGACCCTAACATGTACTATGGAGCCTATCCTGGATATGGAAATTACCAGCAGCCACAGCAATGA 1218 0.5074 MQPAPMDQQQPPQYQQPPPQQQWMMMPPPQQQQQTQPPPAWAQQAPVPPPQAQPQMAPPPQQQQYVAAPQASNPEEIRSLWIGDLQPWMEENYLWGCFSQTGEVVSVKVIRNKQTGQCEGYGFIELATRAAAERILQTYNGTLMPNSEQNFRLNWATLGAGERRADDTPDYTIFVGDLASDVTDYVLQETFRGHYPSVKGAKVVTDRTTGRSKGYGFVRFGDEGEQLRAMNEMNGMFCSTRPMRIGPAATKKPVGGQQFQKASFQNTQGNQGESDPNNTTIFVGGLDSNVTDDYLRQVFSQYGELVHVKIPVGKRCGFVQFANRACAEQALAGLNGTQLGAQSIRLSWGRSPSNKQAQPDQAQWNGGYYGYAQGYEAYGYAPPPQDPNMYYGAYPGYGNYQQPQQ* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0581 405 FunFam Polyadenylate-binding protein RBP47B 77 157 - -
Vvi19g0581 405 Gene3D - 259 361 IPR012677 -
Vvi19g0581 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 158 IPR000504 GO:0003723
Vvi19g0581 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 148 IPR000504 GO:0003723
Vvi19g0581 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 344 IPR000504 GO:0003723
Vvi19g0581 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 241 IPR000504 GO:0003723
Vvi19g0581 405 MobiDBLite consensus disorder prediction 1 71 - -
Vvi19g0581 405 FunFam Polyadenylate-binding protein RBP45C 256 361 - -
Vvi19g0581 405 SUPERFAMILY RNA-binding domain, RBD 160 272 IPR035979 GO:0003676
Vvi19g0581 405 CDD RRM1_SECp43_like 79 157 - -
Vvi19g0581 405 SUPERFAMILY RNA-binding domain, RBD 42 157 IPR035979 GO:0003676
Vvi19g0581 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 250 IPR000504 GO:0003723
Vvi19g0581 405 SMART rrm1_1 79 154 IPR000504 GO:0003723
Vvi19g0581 405 SMART rrm1_1 280 347 IPR000504 GO:0003723
Vvi19g0581 405 SMART rrm1_1 172 246 IPR000504 GO:0003723
Vvi19g0581 405 FunFam Polyadenylate-binding protein RBP45C 161 255 - -
Vvi19g0581 405 SUPERFAMILY RNA-binding domain, RBD 265 377 IPR035979 GO:0003676
Vvi19g0581 405 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 62 355 - -
Vvi19g0581 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 351 IPR000504 GO:0003723
Vvi19g0581 405 MobiDBLite consensus disorder prediction 1 57 - -
Vvi19g0581 405 CDD RRM2_SECp43_like 170 249 - -
Vvi19g0581 405 Gene3D - 77 157 IPR012677 -
Vvi19g0581 405 Gene3D - 159 258 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0581 Vvi-Chr19 6414150 6422449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0581 77 398 Eukaryotic Initiation Factors Gene Family AT2G23350 27.299 4.43e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0581 - - vvi:100250363 658.677