Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0559 ATGATTCATGCAGCGAGCAGCAAGAGGAGGTACATAACAAAAATTGGACAGGGAAATCTTTCTACCCGGATTTTCACTTTTCGCGAGCTATGTTCTGCAACTAAGAACTTCAAACGTGAATGTTTGCTGGGAGAAGGCGGTTTTGGGAGGGTGTACAAAGGCTACATTGACAACCCAAGCCAAGCTGTTGCTGTTAAGCAACTGGACAGGAATGGATTCCAAGGAAACCGAGAATTCCTCGTGGAGGTTCTGATGTTGAGTCTCCTCCACCATCCCAATCTTGTCAATTTGGTTGGATATTGCGCGGATGGTGATCAAAGGATTTTAGTGTATGAGTACATGGCCAATGGTTCCTTGGAGGATCACCTTCTTGGTTTATCACAAAATAGGAAACCTCTGGATTGGATCACCAGGATGAGAATTGCTGAAGGAGCAGCAAGAGGACTTGAACACTTGCATGAAACAGCCAACCCTCCAGTAATTTACAGAGACTTCAAAGCATCAAACATACTGTTGGATGAGGACTTCAATCCAAAGCTCTCAGATTTTGGACTTGCCAAGGTAGGTCCAACTGGGGATAACACCCATGTCTCCACCAGGGTGATGGGGACATACGGCTATTGTGCACCAGAGTATGCCCTCACAGGCCGGTTGACTACAATGTCCGATGTATACAGCTTTGGAGTTGTGTTCTTGGAGATCATCACAGGACGGAGGGTTATCGACTATTCAAGACCAAGAAATGAGCAGAATCTAGTTACTTGGGTATGTTTCAATCTTCCCAACCAAGCATGCATTCTCTTCTATAAACGCAACATTGTCCATTAA 828 0.4505 MIHAASSKRRYITKIGQGNLSTRIFTFRELCSATKNFKRECLLGEGGFGRVYKGYIDNPSQAVAVKQLDRNGFQGNREFLVEVLMLSLLHHPNLVNLVGYCADGDQRILVYEYMANGSLEDHLLGLSQNRKPLDWITRMRIAEGAARGLEHLHETANPPVIYRDFKASNILLDEDFNPKLSDFGLAKVGPTGDNTHVSTRVMGTYGYCAPEYALTGRLTTMSDVYSFGVVFLEIITGRRVIDYSRPRNEQNLVTWVCFNLPNQACILFYKRNIVH* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0559 275 PANTHER OS07G0668900 PROTEIN 17 257 - -
Vvi19g0559 275 CDD STKc_IRAK 43 256 - -
Vvi19g0559 275 FunFam Putative receptor-like serine/threonine-protein kinase 114 265 - -
Vvi19g0559 275 FunFam Serine/threonine-protein kinase CDL1-like 8 113 - -
Vvi19g0559 275 Gene3D Phosphorylase Kinase; domain 1 9 113 - -
Vvi19g0559 275 ProSitePatterns Protein kinases ATP-binding region signature. 43 66 IPR017441 GO:0005524
Vvi19g0559 275 ProSiteProfiles Protein kinase domain profile. 37 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0559 275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Vvi19g0559 275 SUPERFAMILY Protein kinase-like (PK-like) 19 265 IPR011009 -
Vvi19g0559 275 Pfam Protein kinase domain 39 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0559 275 Gene3D Transferase(Phosphotransferase) domain 1 114 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0559 Vvi-Chr19 6231742 6232754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0559 19 256 Glycoside Hydrolase AT3G07070 73.950 1.29e-133 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vvi19g0559 Pkinase 3.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0559 - - vri:117908972 513.457