Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0557 ATGGTGATGATGTACCCAATTCAGAGACGCAAGTACAGGGATGGGATCAATAATCTTTCGGTGTTTCTCATAGGAAGAATACCAATTGCCATGCCAACAGTGTTGTCAGTGACAATGGCCATAGGCTCTCCCCGGCTGTCAAAGCAAGGTGCTACCACAAAGAGGATGACAGCAATAGAAGAGATGGCTGGAATGGATGTTTCTTTGCGGTGA 213 0.4648 MVMMYPIQRRKYRDGINNLSVFLIGRIPIAMPTVLSVTMAIGSPRLSKQGATTKRMTAIEEMAGMDVSLR* 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0557 70 Gene3D - 1 65 - -
Vvi19g0557 70 SUPERFAMILY Calcium ATPase, transmembrane domain M 6 64 IPR023298 -
Vvi19g0557 70 PANTHER CALCIUM-TRANSPORTING ATPASE 3 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0557 Vvi-Chr19 6218326 6218538 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0557 1 67 Primary Pumps ATPases AT4G30190 85.075 2.21e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0557 K01535 - vvi:104877609 132.494