Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0540 ATGGTTTCTCCTGGAAGAGAGAATGTGTTGTGCCTTGCTGAGCGAATGATGAGAAAATTTTGGGCTAATCTCAGTGATTCATCAGAAAACACATGGAGGCCAGTACCACTAAAGGGAGCTGAAAATGTTCGGGCCATGATCAGAAGTGGTGAAGATGAAGAAGGACGACCTCCTGGTACAGCGATAGTTATTGCAACATCTGTGTGGGTTCCTGCATCACCAAGGAGGGTTTTTGATTTCCTCCATGATGTGCATACACGAAATAGGTGGGATATTCTTACTTGTGGACATGTTGTTAAAGAAACTGGACACATTGATAATGGTTGTGATCATGGAAACCGAGTTTCTATATTGGAAGTGAAGTCTCCAGAGGACCAGATCGTTGTAATACTTCTTCAAGAGAGCTATACTACTTTTACAAGCTCTTATGTAACTTTTGCACCTGTTGAAGCTTGTACCCTGGATATGATCCTAAATGGAGGCAGCCCGGATCATGTGCCCATCTTGCCCTCGGGGTTTTCTATTCTTCCTGATGGGCCAACGAGGGATGGAGGGAGCGGAAGTCTTGTGACAATGGCATTTCAGATCTTGGATAATTCCTCGTCTGCTACATATATCCCTCCTGAATCAGTAGCGACTATTTTTAAACTCGTAACAGAGACTGCTGAGTGCATCAAGGCCGCAATGTTTAGTCCATCAAACTTGGGAACATGA 714 0.4412 MVSPGRENVLCLAERMMRKFWANLSDSSENTWRPVPLKGAENVRAMIRSGEDEEGRPPGTAIVIATSVWVPASPRRVFDFLHDVHTRNRWDILTCGHVVKETGHIDNGCDHGNRVSILEVKSPEDQIVVILLQESYTTFTSSYVTFAPVEACTLDMILNGGSPDHVPILPSGFSILPDGPTRDGGSGSLVTMAFQILDNSSSATYIPPESVATIFKLVTETAECIKAAMFSPSNLGT* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0540 237 SUPERFAMILY Bet v1-like 12 211 - -
Vvi19g0540 237 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 229 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0540 Vvi-Chr19 6077196 6084779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0540 5 229 Homeobox Transcription Factor Family AT1G05230 49.130 4.96e-64 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0540 K09338 - vvi:104877581 477.248