Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0536 ATGGCTGATTCCATTCTCACATCAGATCACCTGAAAAAGGCATTACATGTGTTGGGGCTCCTGAGTCTCTTGCTGCTGATGCAGAAAGTTGGTGCGACTGAGTTCAAAGTTGGAGGCCCAAATGGTTGGTCTGTTCCTGCTGATGCTGCACTCAGCTATAACCAATGGGCGGAAAGGAATCGGTTTCAAAGGGGCGATTCTCTGCTGTTTGTTTACCCGGCTGGCAACGACTCGGTGCTCTATGTAAACAAGGATGATCATAACAATTGCAACACGGCAACACCCCTGGAACTGCACAAGGATGGGCACACTACTTTCAAGTTGAATCAGTCTGGTGCTCACTACTTCATAAGTGGGGTAGTAGATAACTGTCTCAAGAATGAAAAACTAGTGGTGGTTGTTCTTGCAGAGAGGAGCAAGGAATCTTTAACCCCTGCTTCCCCACCATCTGGATCAACAGATATAGTCCCACCATCTGGATCAACAGATATAGTCCCATCTCCGGCACCTGCAGGCGAGGAATCTCCTTCTCCACCTGAGGGGTTGGTGCAGATAGCCCCCTCCCCACCTCCTGGAGGTGAGGAGCCTTCTCCAAGTGGAGCTTCATCGGTATTTATCAGTTTTATCGGTTCCATCGGAGCTCTTGTTGGTTCATCTCTTCTTCTAGCTTGA 672 0.4896 MADSILTSDHLKKALHVLGLLSLLLLMQKVGATEFKVGGPNGWSVPADAALSYNQWAERNRFQRGDSLLFVYPAGNDSVLYVNKDDHNNCNTATPLELHKDGHTTFKLNQSGAHYFISGVVDNCLKNEKLVVVVLAERSKESLTPASPPSGSTDIVPPSGSTDIVPSPAPAGEESPSPPEGLVQIAPSPPPGGEEPSPSGASSVFISFIGSIGALVGSSLLLA* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0536 223 Gene3D - 32 146 IPR008972 -
Vvi19g0536 223 MobiDBLite consensus disorder prediction 141 200 - -
Vvi19g0536 223 MobiDBLite consensus disorder prediction 182 196 - -
Vvi19g0536 223 MobiDBLite consensus disorder prediction 143 160 - -
Vvi19g0536 223 SUPERFAMILY Cupredoxins 32 135 IPR008972 -
Vvi19g0536 223 CDD OsENODL1_like 33 135 IPR041846 -
Vvi19g0536 223 FunFam Early nodulin-like protein 1 32 139 - -
Vvi19g0536 223 PANTHER BLUE COPPER PROTEIN 33 147 IPR039391 GO:0009055
Vvi19g0536 223 ProSiteProfiles Phytocyanin domain profile. 33 136 IPR003245 GO:0009055
Vvi19g0536 223 Pfam Plastocyanin-like domain 43 126 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0536 Vvi-Chr19 6032566 6033343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0536 18 209 Phytocyanin Superfamily AT3G20570 46.114 4.41e-48 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0536 - - vvi:100253691 379.022