Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0519 ATGGGAAGAAAAAACAGCATGTTCCAGTATGCTGATGGTGTGGACAAGTGGTTGATGTTGTTGGGGACTCTGGGCTGCATAGGAGACGGGTTGCAGAGCGCTCTTTCTATGTTCATTCTAAGCGATATCATCAACGACTATGGAAAAAGCAATAGTTCTATCACAATACATATTGTAGACAAGTATGCACTCAAGCTACTCTATGTTGCTGTTGGAGTTGGGATTTCAGCATTTATCGAAGGAATATGTTGGACAAGAACTGCAGAGAGACAGACTTCTCGGATGAGAATAAAGTACCTGAAATCTGTTCTAAGACAAGAAGTTGGTTTCTTTGATTCCCAAGGTGCTGATTCTTCAATAACATACCAGGTTGTCTCAACCCTCTCCTCAGATGCCAACTCAATCCAAGCCGTGATAGGCGAGAAGATACCTGACTGCCTTGCCTACACGGCTGCTTTCATCTTCTGCCTGCTGTTTGCCTTCATATTGTCATGGAGATTAGCATTGGCGTCTCTTCCTTTTACAGTCATGTTCATCATTCCGGGACTGGGATTTGGGAAGCTGATGATGGACCTGGGAATGAAGATGATTGAATCTTATGGGGTTGCTGGTGGGATTGCGGAGCAGGCCATTTCTTCAATAAGAACTGTATATTCATTTGTGGGAGAGCATCAAACACTAGTTAAGTTCAGTCAAGCACTTCAGAAAACTATGGAGCTAGGAATAAAGCAAGGTTTCGCCAAGGGATTGATGATGAGTAGCATGGGAATAATCTATGTCAGCTGGGCTTTCCAGGCCTGGATTGGGACTTATCTGGTTACTAAGAAAGGAGAAAGCGGTGGCCCGTTATTTGTAGCTGGATTCAATGTCCTCATGGGAGGATTGTATGTCTTGAGTGCACTCCCAAATCTGACTTCCATCTCAGAGGCAACAGCTGCTGCTACTCGGATTTTTGAGATGATCGATCGAGTTCCTGCCTTGGACTCTGAAGATAGAAAGGGGAAGGCTTTAGCATATGTGAGAGGGGAGATCGAGTTTAAGGACATCCATTTTAGTTACCCATCAAGACCTGATTCACCAATTCTACAGGGTTTCGATCTAAGAGTTCGGGCTGGTAAGACCGTGGGGCTTGTTGGGGGCAGTGGCTCTGGGAAGTCCACTGTCATTTCATTGCTTGAAAGATTTTATGACCCCACCAAAGGAGAGATTCTCTTGGATGGATACAAAGTTAATAGGCTTAATCTTAAATGGTTGAGATCCCAAATGGGTCTGGTCAATCAAGAGCCAGTCCTCTTTGCAACTTCCATAAAAGAGAACATACTTTTCGGAAAAGAAGGAGCCTCAATGGAGCTTGTAGTAAGTGCGGCTACGGCCGCAAATGCTCATGACTTCATCACCAAGTTACCAGATGGATACGAAACACAGGTTGGGCAATTTGGAGTTCAACTGTCTGGTGGGCAGAGGCAGCGAATTGCCATAGCGAGGGCTCTAATCAGGGATCCGAAAATCCTCCTGCTTGATGAAGCTACAAGTGCTTTGGATACAGAGTCTGAAAGAATAGTACAGGATGCACTGGATCAAGCATTGGTAGGGAAGACAACAATTGTTGTTGCCCATCGCCTCTCCACAATCCGAATGGCCAGTATGATTGTGGTTCTTCAGAATGGGAGAGTTGTAGAAAAAGGGTCACATGATGAGTTGATGCAAATGAATGGAAGACAGGGCGGGGAGTACTTCAGAATGGTACAGTTGCAGCAGAAGGCGATGCAAAGTGAAGAGGATTCTTTCTGTTCTGATTATCAGTCTGATGTAAAATACCAACACAGGATGTATACGGCACCAAGCCCAATCAGTGTCAGATCAAGCACACCGAGTACCCCAGCATTGCATGCCTTTAGCCCAGCATATTCCATCAGTGCACCTTTCTCAATCCAATTTGACCCCTCTGAAGAAAGTTATGAAGAAGATTCAGAGAAGTCGACTTATCGACCTCCTTCTCAGTGGCGTCTGCTGAAAATGAATGCACCCGAATGGAAAAGTGCCTTGCTTGGATGCCTAGGGGCCATAGGCTCTGCAGCAGTTCAACCCATCAATGCTTACTGTGTGGGGACACTTATATCAGTGTATTTCAACACTGATGAGTCCTCCATGAAATCTGAATCCAGATTCTATTCCTACCTTTTCTTAGGCCTTTGCGTTTACAACTTCATCATGAATGTCCTCCAACATTACAATTTTGCAGTCATGGGAGAAAGATTTACCAAAAGGGTTAGGGAGAAACTGCTAGAAAAGCTGATGACTTTCGAGATTGGGTGGTTTGATCAAGAAGAGAACAATAGTGCAGCCGTTTGTGCAAGGTTAGCTACAGAAGCCAGCATGGTTCGAACTCTTGTTGGGGAGCGTATGTCTTTACTGGTTCAAGCGGTCTTTGCGACTTCTTTTGCATATGGACTAGGACTTGTGCTCACATGGAGACTCACCCTTGTGATGATTGCAGTGCAGCCACTAGTCATTGGAAGCTTTTACTCCAGAACTGTTTTGGCAAAAAGTATGTCTTCTAAAGCCCGAAAAGCACAGAAGGAAGGAAGCCAATTAGCAAGTGAAGCTACTGTCAACCATAGAACTATTACTGCCTTCTCTTCTCAGAGGAGAATACTGGGGCTCTTCAAAGACAGCCTGAAAGGTCCTAGAAAGGAGAATGTTAAGCTATCCTGGTTTTCTGGCTTTGGATTGTTTATGGCCCAGTTCTTAACAACAGCTTCCATGGCTTTGGCTTTCTGGTATGGAGGGAGGCTAATGACACAAGGATTAATAACCCCAAAGCGCCTTTTTCAAGCATTCTTGATCTTGACATTTACGGCTAAAATCATTGCAGATGCAGGAAGCATGACTTCTGATTTATCTAAAGGAAGCAATGCCATCCGATCAGTTTTTGCAATCCTGGACAGGAAAAGTGAGATTGATCCAGAAAACTCATGGGGAATTGACCCTGAGAAAACAACAGTGAAGGGCCGGATAGAGCTGAAAAATGTATTCTTTGCATATCCAGCAAGGCCAAATCAATTGATCCTGAAGGGCCTGAGCCTTAAAATTGAAGCAGGAAGAACAGTTGCATTAGTGGGGCAGAGTGGCTCTGGAAAATCTACCATCATCGGGCTTATTGAGAGATTTTACGACCCACTGAGGGGATCAATACATATAGATGAACTGGATATCAAGAACCATAACTTAAGGATCCTGAGATCAAATATCGCACTAGTCAGCCAGGAGCCAACCCTTTTTGCAGCAACCATCCGTGAGAACATTGCCTATGGGAAAGAAAATGCTACAGAATCCGAGATAAGGAAGGCTGCGGTTCTTGCCAATGCCCATGAATTCATAAGTGGAATGAAAGACGGGTACGACACTTACTGTGGAGAAAGAGGGGTTCAATTATCAGGAGGCCAGAAACAAAGAGTAGCAATAGCTCGAGCCATACTCAAGAATCCATCAGTCCTGCTCCTGGACGAGGCGACCAGTGCCCTGGACAGCGCATCCGAAAGGTCGGTCCAAGAAGCACTTGACAAGATGATGGTTGGAAGAACATGTCTAGTCATTGCTCACCGGTTGTCCACAATACAGAACTCTAACACCATTGCTGTAATCAAGAACGGAATGGTCGTGGAAAAAGGGTCACATTCTGAGCTTCTTTCCTTTGGACCGGGCGGCTCATACTACTCCTTAATAAAACCACAAGTGGGTGACTCCCCTTACCGGTGA 3759 0.4499 MGRKNSMFQYADGVDKWLMLLGTLGCIGDGLQSALSMFILSDIINDYGKSNSSITIHIVDKYALKLLYVAVGVGISAFIEGICWTRTAERQTSRMRIKYLKSVLRQEVGFFDSQGADSSITYQVVSTLSSDANSIQAVIGEKIPDCLAYTAAFIFCLLFAFILSWRLALASLPFTVMFIIPGLGFGKLMMDLGMKMIESYGVAGGIAEQAISSIRTVYSFVGEHQTLVKFSQALQKTMELGIKQGFAKGLMMSSMGIIYVSWAFQAWIGTYLVTKKGESGGPLFVAGFNVLMGGLYVLSALPNLTSISEATAAATRIFEMIDRVPALDSEDRKGKALAYVRGEIEFKDIHFSYPSRPDSPILQGFDLRVRAGKTVGLVGGSGSGKSTVISLLERFYDPTKGEILLDGYKVNRLNLKWLRSQMGLVNQEPVLFATSIKENILFGKEGASMELVVSAATAANAHDFITKLPDGYETQVGQFGVQLSGGQRQRIAIARALIRDPKILLLDEATSALDTESERIVQDALDQALVGKTTIVVAHRLSTIRMASMIVVLQNGRVVEKGSHDELMQMNGRQGGEYFRMVQLQQKAMQSEEDSFCSDYQSDVKYQHRMYTAPSPISVRSSTPSTPALHAFSPAYSISAPFSIQFDPSEESYEEDSEKSTYRPPSQWRLLKMNAPEWKSALLGCLGAIGSAAVQPINAYCVGTLISVYFNTDESSMKSESRFYSYLFLGLCVYNFIMNVLQHYNFAVMGERFTKRVREKLLEKLMTFEIGWFDQEENNSAAVCARLATEASMVRTLVGERMSLLVQAVFATSFAYGLGLVLTWRLTLVMIAVQPLVIGSFYSRTVLAKSMSSKARKAQKEGSQLASEATVNHRTITAFSSQRRILGLFKDSLKGPRKENVKLSWFSGFGLFMAQFLTTASMALAFWYGGRLMTQGLITPKRLFQAFLILTFTAKIIADAGSMTSDLSKGSNAIRSVFAILDRKSEIDPENSWGIDPEKTTVKGRIELKNVFFAYPARPNQLILKGLSLKIEAGRTVALVGQSGSGKSTIIGLIERFYDPLRGSIHIDELDIKNHNLRILRSNIALVSQEPTLFAATIRENIAYGKENATESEIRKAAVLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRVAIARAILKNPSVLLLDEATSALDSASERSVQEALDKMMVGRTCLVIAHRLSTIQNSNTIAVIKNGMVVEKGSHSELLSFGPGGSYYSLIKPQVGDSPYR* 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0519 1252 ProSitePatterns ABC transporters family signature. 483 497 IPR017871 GO:0005524|GO:0016887
Vvi19g0519 1252 Pfam ABC transporter 1024 1173 IPR003439 GO:0005524
Vvi19g0519 1252 FunFam ABC transporter B family member 15-like 7 340 - -
Vvi19g0519 1252 CDD ABC_MTABC3_MDL1_MDL2 344 585 - -
Vvi19g0519 1252 Pfam ABC transporter 362 511 IPR003439 GO:0005524
Vvi19g0519 1252 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 317 - -
Vvi19g0519 1252 SUPERFAMILY ABC transporter transmembrane region 7 328 IPR036640 GO:0005524|GO:0016020
Vvi19g0519 1252 Gene3D - 342 603 IPR027417 -
Vvi19g0519 1252 ProSitePatterns ABC transporters family signature. 1145 1159 IPR017871 GO:0005524|GO:0016887
Vvi19g0519 1252 Pfam ABC transporter transmembrane region 683 953 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0519 1252 Pfam ABC transporter transmembrane region 20 293 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0519 1252 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 344 580 IPR003439 GO:0005524
Vvi19g0519 1252 CDD ABC_MTABC3_MDL1_MDL2 1006 1245 - -
Vvi19g0519 1252 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 309 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0519 1252 Gene3D ABC transporter type 1, transmembrane domain 65 978 IPR036640 GO:0005524|GO:0016020
Vvi19g0519 1252 CDD ABC_6TM_Pgp_ABCB1_D2_like 671 987 - -
Vvi19g0519 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1000 1245 IPR027417 -
Vvi19g0519 1252 FunFam Putative ABC transporter B family member 8 646 992 - -
Vvi19g0519 1252 PANTHER ABC TRANSPORTER B FAMILY 6 740 IPR039421 -
Vvi19g0519 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 585 IPR027417 -
Vvi19g0519 1252 SMART AAA_5 371 557 IPR003593 GO:0016887
Vvi19g0519 1252 SMART AAA_5 1033 1225 IPR003593 GO:0016887
Vvi19g0519 1252 FunFam ABC transporter B family member 4 996 1249 - -
Vvi19g0519 1252 Gene3D - 997 1249 IPR027417 -
Vvi19g0519 1252 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1242 IPR003439 GO:0005524
Vvi19g0519 1252 FunFam ABC transporter B family member 4 334 593 - -
Vvi19g0519 1252 SUPERFAMILY ABC transporter transmembrane region 668 988 IPR036640 GO:0005524|GO:0016020
Vvi19g0519 1252 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 682 969 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0519 Vvi-Chr19 5812018 5816845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0519 7 1245 Calmodulin-binding Proteins AT2G36910 43.965 0.0 1014
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0519 K05658 - vvi:100248698 2399.01