Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0513 ATGCAACAAGAAAGTCACAGATGCTATTGGTGTGAAGGATGCCAAAAGAATGATGATGAGTGCAGTTTAAGGTACATAATGGTAGTGAAAGTTTCAGATGCTAGTGGTGAAGCTTGGCTTTCTCTGTTCAATGAACAAGCAGAGAGAATATTTGGGTACTCTGCTGATGAGCTTGATAAGCTGAAATCACAGGAGGGAGAAGAGAACCTATTCCAACAGAAAATGTAG 228 0.4035 MQQESHRCYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNEQAERIFGYSADELDKLKSQEGEENLFQQKM* 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0513 75 Pfam Replication factor-A C terminal domain 4 68 IPR013955 -
Vvi19g0513 75 CDD RPA1_DBD_C 1 68 IPR047192 -
Vvi19g0513 75 FunFam - 1 75 - -
Vvi19g0513 75 Gene3D - 1 75 IPR012340 -
Vvi19g0513 75 SUPERFAMILY Nucleic acid-binding proteins 6 68 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0513 Vvi-Chr19 5754235 5754771 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0513 9 75 Core DNA Replication Machinery Family AT5G61000 67.164 3.89e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0513 K07466 - vvi:100255412 137.117