LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi19g0496	ATGGAAGTTGTGGCTTCAATAGTGGGTGCACTTATAGCAGAAGCTGCTCGACATCTTTGTAGCCGTGTTTATTCTACAACCAGGGGTTGCCTTGCCAGGATAGTGGCTGTGAGTTGTGCAAAACGAGCAGTGGAGCATATACCAGGGCCGTCGATCGAAGATCAAACCACAGCCTCAGGAACCTTAGAAAAAATCATGGATCTTCTGAACGATGATGGAGTTAGGAGGATTGGTATCTGGGGTATGGGAGGGGTGGGCAAGACTACTTTGGTAAGGAACTTGAACAACAAGCTCAGGAATGATCCAAACAACACTTTTGGCTTGGTCATATGGAGTACAGTGTCCAAGGAGGTGGATTTGAAAAGGATCCAAACAGAAATTGCAAAGAGATTGGGGATGGAAGTGAAAAAAGATGAAAGCATCCAGACTCTGGCTATTCAATTGCTCCAGAAACTGAGAAAGCAAGACAGGTTTCTCCTCATTCTGGATGATGTTTGGAAGGGAATCGATTTGGATGCTTTAGGCGTCCCACAGCCTGAAGATACAAAGGGTGGTAAGATCATATTGACTTGTCGACCTTTGAATGTTTGTCGAGAGATGAAGACTGATCAAGATGTTAAAGTGGATGTCTTGACTGATGATGAAGCTTGGAAATTGTTTTGTCAAAATGCAGGCATGGTAGCTGAATTAGAACATATTAAACCACTAGCAGAGGCAATTGTTCAAGAATGTGCTGGATTGCCATTGGCGATAAACATCATGGCGACATCCATGAGGGGAAAACAAATGGTTGAGCTCTGGAAGGATGCCTTGAATGAGCTGCAAAAGTCTGTGCCGAGTAATATTGAAGGGGTTGAGGATAAGGTTTATCGGACCTTGAAATGGAGTTATGACTCACTACAAGGTATGAACATCAAATATTGTTTCCTGTATTGTTCTTTATTTCCTGAGGATTTCTCAATTGAAATAAGTCATCTTGTGCAATATTGGATGGCGGAAGGCTTGATAGATGAAGATCAAAGCTATGAAGTTATGTACAATAGAGGATTTGCTTTGGTTGAGAATTTGAAGGACTGCTGTTTGTTGGAACATGGTAGCCGAAAGGACACCACTGTGAAAATGCATGATGTTGTTCGGGATGTTGCTATATGGATTGCATCCTCCCTGGAGGATGAATGTAAATCCCTTGTTCAATCAGGAATTGGGTTGAGCAAAATCTCAGAGTACAAATTTACGAGGTCTCTCAAGAGAATTTCTTTCATGAATAACCAAATATCATGGCTGCCTGACTGTGGGATAAACTGCCCAGAGGCATCAGCTTTACTTCTGCAAGGTAATACTCCCCTTGAAAAAGTTCCAGAAGGATTCCTACGAGGCTTTCCAGCACTCAAAGTCTTGAATCTATCTGGAACCCGCATCCAGAGGTTGCCACTTTCCCTTGTCCATCTTGGTGAACTTCGTGCTCTCCTTTTAAGGAATTGCAGTTTTCTTGAAGAATTACCCCCTGTAGGAGGGCTTAGTAGACTTCAAGTGCTTGACTGTGCCTCTACTAACATCAAGGAATTACCTGAAGGGATGGAGCAATTGAGCTACTTAAGGGAGTTGCATCTATCAAGAACCAAGCAGTTGACAACCATTCAAGCTGGAGTCCTCTCTGGGTTGTCTAGTTTAGAGGTTCTAGACATGAGAGGAGGTAACTACAAGTGGGGTATGAAAGGAAAGGCAAAACATGGACAAGCAGAATTTGAGGAGCTAGCAAATCTCGGGCAGTTAACTGGTTTGTACATTAATGTGCAGAGCACCAAATGTCCTTCTTTGGAGAGTATTGACTGGATAAAAAGACTGAAAAGCTTCAAAATATGTGTTGGTTTAAGTATCTGTGATGTATATGAACATGGGCATTTTGATGAAAGAATGATGTCTTTTGGTCATCTCGATCTATCGAGGGAATTTCTTGGGTGGTGGTTAACTAATGCAAGTTCTCTGTTCTTGGATTCCTGCAGGGGCCTAAATCTGATGCTTGAAACCTTAGCCATCAGCAAGGTTGATTGCTTTGCTAGTTTAAAGAAACTTACTATTATGCATTCTGCTACCAGCTTTCGGCCAGCAGGAGGATGTGGTTCCCAATATGACCTACTTCCAAATCTAGAAGAACTTTACCTTCATGATCTCACTTTTCTGGAGAGTATTTCAGAATTAGTTGGTCATCTTGGACTTAGATTCTCAAGGCTGAGAGTGATGGAGGTGACCTTGTGTCCCAGCTTAAAGTATCTGTTAGCTTATGGTGGTTTCATTCTGAGCTTAGACAACCTGGATGAAGTCAGCTTAAGCCATTGTGAGGACCTGAGTGATCTCTTCCTATACAGTTCAGGGGACACCTCAATTTCAGATCCTGTTGTTCCAAACTTACGGGTGATAGACTTGCATGGCCTTCCCAATCTGAGGACCTTTTGCAGACAAGAAGAGTCATGGCCCCATCTGGAGCATCTTCAAGTGTCTCGGTGTGGTCTTCTCAAGAAGCTACCTCTCAATAGGCAAAGTGCAACCACAATAAAGGAAATAAGAGGAGAACAAGAGTGGTGGAACCAATTGGAGTGGGATGATGACAGCACCCGGTTGAGCCTCCAGCACTTTTTCCAACCTCCACTTGATCTGAAAAACTTCGGGCCAAGTTGA	2676	0.4309	MEVVASIVGALIAEAARHLCSRVYSTTRGCLARIVAVSCAKRAVEHIPGPSIEDQTTASGTLEKIMDLLNDDGVRRIGIWGMGGVGKTTLVRNLNNKLRNDPNNTFGLVIWSTVSKEVDLKRIQTEIAKRLGMEVKKDESIQTLAIQLLQKLRKQDRFLLILDDVWKGIDLDALGVPQPEDTKGGKIILTCRPLNVCREMKTDQDVKVDVLTDDEAWKLFCQNAGMVAELEHIKPLAEAIVQECAGLPLAINIMATSMRGKQMVELWKDALNELQKSVPSNIEGVEDKVYRTLKWSYDSLQGMNIKYCFLYCSLFPEDFSIEISHLVQYWMAEGLIDEDQSYEVMYNRGFALVENLKDCCLLEHGSRKDTTVKMHDVVRDVAIWIASSLEDECKSLVQSGIGLSKISEYKFTRSLKRISFMNNQISWLPDCGINCPEASALLLQGNTPLEKVPEGFLRGFPALKVLNLSGTRIQRLPLSLVHLGELRALLLRNCSFLEELPPVGGLSRLQVLDCASTNIKELPEGMEQLSYLRELHLSRTKQLTTIQAGVLSGLSSLEVLDMRGGNYKWGMKGKAKHGQAEFEELANLGQLTGLYINVQSTKCPSLESIDWIKRLKSFKICVGLSICDVYEHGHFDERMMSFGHLDLSREFLGWWLTNASSLFLDSCRGLNLMLETLAISKVDCFASLKKLTIMHSATSFRPAGGCGSQYDLLPNLEELYLHDLTFLESISELVGHLGLRFSRLRVMEVTLCPSLKYLLAYGGFILSLDNLDEVSLSHCEDLSDLFLYSSGDTSISDPVVPNLRVIDLHGLPNLRTFCRQEESWPHLEHLQVSRCGLLKKLPLNRQSATTIKEIRGEQEWWNQLEWDDDSTRLSLQHFFQPPLDLKNFGPS*	892

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi19g0496	891	Gene3D	Ribonuclease Inhibitor	648	865	IPR032675	-
	Vvi19g0496	891	FunFam	Probable disease resistance protein At1g61300	40	205	-	-
	Vvi19g0496	891	Gene3D	-	210	296	IPR042197	-
	Vvi19g0496	891	Gene3D	Ribonuclease Inhibitor	382	647	IPR032675	-
	Vvi19g0496	891	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	53	312	IPR027417	-
	Vvi19g0496	891	Pfam	NB-ARC domain	61	298	IPR002182	GO:0043531
	Vvi19g0496	891	PRINTS	Disease resistance protein signature	76	91	-	-
	Vvi19g0496	891	PRINTS	Disease resistance protein signature	152	166	-	-
	Vvi19g0496	891	PRINTS	Disease resistance protein signature	244	258	-	-
	Vvi19g0496	891	PRINTS	Disease resistance protein signature	766	782	-	-
	Vvi19g0496	891	SUPERFAMILY	L domain-like	373	846	-	-
	Vvi19g0496	891	FunFam	Probable disease resistance protein At5g66910	210	296	-	-
	Vvi19g0496	891	PANTHER	NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED	61	842	-	-
	Vvi19g0496	891	Gene3D	-	40	208	IPR027417	-
	Vvi19g0496	891	FunFam	Probable disease resistance protein At1g63360	297	384	-	-
	Vvi19g0496	891	Gene3D	-	297	381	IPR036388	-
	Vvi19g0496	891	Pfam	Leucine rich repeat	508	564	IPR001611	GO:0005515
	Vvi19g0496	891	Pfam	Leucine rich repeat	440	495	IPR001611	GO:0005515
	Vvi19g0496	891	SMART	AAA_5	73	212	IPR003593	GO:0016887

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi19g0496	Vvi-Chr19	5432059	5434734	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi19g0496	74	316	WRKY Transcription Factor Family	AT5G45050	23.970	1.07e-08	57.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi19g0496	K13459		-	vvi:100252193	1779.99