Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0494 ATGGAATTCGTGGCTTCAGTATTGGGGTCAGTAGTTGCAGAAGCTTGTCGACATCTTTGTGGGTTTCCCTGTTCTAAATTTAGTAATCCCTTCAAATTCAAATCAAACGTTAATGATCTCGAAAAGGAGATTCAGCATCTAACTGATCTGAGATCTGAAGTGGAAAATGAGTTTAATTTTGAGTCGGTTTCAACGACACGAGTAATTGAGTGGCTTACGGCGGTTGGAGGGGTAGAGAGTAAGGTTAGTTCAACGACAACAGATTTATCAGCCAACAAAGAGAAGTGTTACGGTGGATTTGTAAATTGCTGTCTGCGTGGTGGGGAAGTGGCAAAGGCCCTCAAGGAGGTACGAAGACTTCAAGCCGATGGAAATTCCATCGCCAACATGGTCGCTGCCCATGGTCAATCAAGAGCAGTGGAGCACATACCAGCCCAATCAATTGAAGATCAACCAACAGCTTCCCAAAATTTGGCCAAAATTTTGCATCTTCTGGAGGATGGTGTTGGGAGTATAGGCGTTTGGGGTATGGGGGGAGTGGGCAAAACCACTCTGGTAAAGAACTTGAACAACAAGCTCGGGAATTCTTCTTCAACCCCACCTTTTGGCATGGTCATATGGGTTACTGTGTCCAAGCAGCTGGACTTGATGAGGATCCAAACCCGAATTGCTGAGAGATTGAGCATGGGAGTGGACAAGAATGATAGCACGGAGAATGTGGCTATTAAATTGCATCGGAGGCTGAAGCAGCAAAACAAGTTTCTCCTCATTCTGGATGATGTTTGGGAGGGAATTGATTTGGATGCTTTGGGTGTCCCACGGCCTGAAGTTCATCCGGGTTGTAAGATCATACTGACAACTCGATTTAGAGACGTTTGTCGAGAGATGAAGACTGATGTAGAATTTAAAATGAATGTCCTAAATGACGCAGAAGCTTGGTATTTGTTCTGTAAAAGCGCAGGCAAGGTGGCCACCTTACGACATATCAAGCCATTAGCAAAGGCAGTAGCTAAAGAATGTGGTGGATTGCCCTTGGAAATAATTATCATGGGGACATCTATGAGGGGAAAAACAAAGGTTGAGCTCTGGAATAATTCCTTGAACCAACTTCAAAGTTCACTGCCATATAGCATCAAAGGAATCGAGGCTAAGGTTTATAGGCCCTTAAAGTGGAGCTACGACTCCTTGCAAGGTAAGGATATCAAGCATTGCTTCCTATATTGTGCTTTGTTTCCTGAGGATTTCTCAATTGAAATAAGTGAACTTGTACAATGCTGGTGGGCAGAAGGTCTCATAGATAATCAAAAGAACTATGATGATATACACAATACGGGAATTGCTTTGGTTGAATCTTTGAAGGACTGTTGTTTGCTGGAAGATGGTGACTTTAAGGACACTGTGAAAATGCATGATGTAGTTCGTGATGTTGCCTTATGGATTGCATCCTCCTTGGAGGATGAATGTAAATCCCTCGTTCGCTCGGGAGTGAGCTTGAGTCATATTTCACCAGTTGAATTATCGGGGCCCCTCAAGAGAGTTTCTTTCATGCTCAACAGTTTAAAAAGTCTACCCAATTGTGTGATGCAGTGTTCAGAGGTATCAACTTTGCTTCTACAAGATAATCCCCTGCTTCGCAGAGTTCCAGAGGACTTTTTTGTGGGATTTCTGGCGCTCAAGGTCTTGAATATGAGCGGGACCCATATCCGTAGGCTGCCTCTTTCCCTTCTCCAACTTGGACAACTCCACAGTCTTCTTTTACGGGATTGCATTTATCTTGAAGAATTGCCCCCACTGGGAAGCCTTAATAGACTGCAAGTGCTCGACTGTAATGGCACTGGTATTAAGGAGTTGCCAAATGAGATGGAACAGTTGAGCAACTTAAGGGTATTAAACCTGTCACGAACTGACTACTTGAAAACTATTCAAGCAGGGGTAGTATCAGAGTTGTCCGGGCTAGAGATTCTAGACATGACCCATAGTAATTACAAATGGGGTGTGAAAGAGGGACAGGCATCATTGGAGGAGCTAGGATGCCTTGAGCAGTTAATTTTTTGTTCAATTGGGTTGGATAGAAACACCTGTACTGCCTCGGAGGAGCTTGTTTGGATAACAAAATTGAAACGCTTCCAATTTCTTATGGGCTCAACCGATTCCATGATTGACAAACGAACCAAATACAAGGAAAGGGTAGTGATCTTCAGTGATCTTGATCTCTCTGGAGAAAGGATTGGAGGGTGGTTAACTCATGTGGATGCCCTGGATTTGGATTCTTGCTGGGGACTAAATGGGATGCTTGAAACCTTGGTCACAAACAGCGTTGGTTGCTTTTCTTGTTTGAAGAAACTGACCATTTCCCATTCTTACAGCAGCTTTAAGCCCGCAGAAGGACATGGTGCTCAGTATGACCTGCTACCTAATCTAGAGGAGATTCACCTTCATTTTCTCAAACATTTACATAGCATTTCAGAATTAGTTGATCATCTTGGACTAAGATTCTCAAAACTAAGAGTCATGGAGGTAACCCGCTGCCCCTACTTAGACCATCTCCTCGATTGTGGTGGTGTTATTTTAACCTTAGAGAACCTGGAAGACCTAAAGGTATCGTCCTGTCCCGAGGTAGTTGAGCTCTTCAAATGCAGTTCACTATCGAACTCAGAGGCCGATCCAATTGTTCCTGGCCTACAGAGAATAAAGTTGACAGACCTTCCCAAATTAAATAGCTTAAGCAGACAACGGGGGACATGGCCGCATCTAGCTTATGTTGAAGTGATAGGTTGTGACAGCCTCAAGAAATTACCTCTCAGTAAGAGAAGTGCAAATGCCCTGAAAGAAATAGTAGGCGAATTGGAGTGGTGGAACCGATTGGAGTGGGATCGGATTGATATCCAGTCCAAACTTCAGCCCTTTTTTAAAGAACAGAGGCCATACTGA 2931 0.4381 MEFVASVLGSVVAEACRHLCGFPCSKFSNPFKFKSNVNDLEKEIQHLTDLRSEVENEFNFESVSTTRVIEWLTAVGGVESKVSSTTTDLSANKEKCYGGFVNCCLRGGEVAKALKEVRRLQADGNSIANMVAAHGQSRAVEHIPAQSIEDQPTASQNLAKILHLLEDGVGSIGVWGMGGVGKTTLVKNLNNKLGNSSSTPPFGMVIWVTVSKQLDLMRIQTRIAERLSMGVDKNDSTENVAIKLHRRLKQQNKFLLILDDVWEGIDLDALGVPRPEVHPGCKIILTTRFRDVCREMKTDVEFKMNVLNDAEAWYLFCKSAGKVATLRHIKPLAKAVAKECGGLPLEIIIMGTSMRGKTKVELWNNSLNQLQSSLPYSIKGIEAKVYRPLKWSYDSLQGKDIKHCFLYCALFPEDFSIEISELVQCWWAEGLIDNQKNYDDIHNTGIALVESLKDCCLLEDGDFKDTVKMHDVVRDVALWIASSLEDECKSLVRSGVSLSHISPVELSGPLKRVSFMLNSLKSLPNCVMQCSEVSTLLLQDNPLLRRVPEDFFVGFLALKVLNMSGTHIRRLPLSLLQLGQLHSLLLRDCIYLEELPPLGSLNRLQVLDCNGTGIKELPNEMEQLSNLRVLNLSRTDYLKTIQAGVVSELSGLEILDMTHSNYKWGVKEGQASLEELGCLEQLIFCSIGLDRNTCTASEELVWITKLKRFQFLMGSTDSMIDKRTKYKERVVIFSDLDLSGERIGGWLTHVDALDLDSCWGLNGMLETLVTNSVGCFSCLKKLTISHSYSSFKPAEGHGAQYDLLPNLEEIHLHFLKHLHSISELVDHLGLRFSKLRVMEVTRCPYLDHLLDCGGVILTLENLEDLKVSSCPEVVELFKCSSLSNSEADPIVPGLQRIKLTDLPKLNSLSRQRGTWPHLAYVEVIGCDSLKKLPLSKRSANALKEIVGELEWWNRLEWDRIDIQSKLQPFFKEQRPY* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0494 976 FunFam Probable disease resistance protein At1g63360 393 479 - -
Vvi19g0494 976 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 408 IPR027417 -
Vvi19g0494 976 FunFam Probable disease resistance protein At1g61300 133 301 - -
Vvi19g0494 976 Gene3D - 393 478 IPR036388 -
Vvi19g0494 976 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 20 933 - -
Vvi19g0494 976 Coils Coil 37 57 - -
Vvi19g0494 976 PRINTS Disease resistance protein signature 171 186 - -
Vvi19g0494 976 PRINTS Disease resistance protein signature 622 638 - -
Vvi19g0494 976 PRINTS Disease resistance protein signature 340 354 - -
Vvi19g0494 976 PRINTS Disease resistance protein signature 248 262 - -
Vvi19g0494 976 Gene3D Ribonuclease Inhibitor 733 947 IPR032675 -
Vvi19g0494 976 Gene3D Ribonuclease Inhibitor 497 728 IPR032675 -
Vvi19g0494 976 SUPERFAMILY L domain-like 468 933 - -
Vvi19g0494 976 Gene3D - 128 304 IPR027417 -
Vvi19g0494 976 Gene3D - 306 392 IPR042197 -
Vvi19g0494 976 Pfam NB-ARC domain 163 394 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0494 Vvi-Chr19 5418523 5421453 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0494 172 641 WRKY Transcription Factor Family AT5G45050 23.019 9.08e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0494 K13459 - vvi:100263996 1926.75