Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0492 ATGGATAAAGAAATTGTAGTGTATTGTCATTCTTGGACAAAGGAACCCAGACCTGATTTCTGGTTGTTTGAAGTTGGTTTTCTGAGAGGAGTTTGGCTTATGGGAAGTGTGGAGCCTGTTTGTGAGTTTTGTGGGGTGGCGAGGGCAGTGGTGTACTGCAAACAGGACATGGCGGCCCTTTGCTTGCAGTGTGATGGCTTTGTGCACTCTGCAAATTTTATATCACAACGCCATGTCCGTTCCCTTCTATGTGACAAGTGCAATTCCCAGCCAGCAACAATTCAATGCCTAGAAGATGAAGCCTGTCTTTGTGAGAGCTGTGAGTGTAATGTTAATTCCTGCTTGGGCTCTGAACACAAGCACCAGCCCTTAAGCTTTTATTCGGGCAGTCCTTCCCCGGAAGAGTTCATAGAAATTTGGTCATCTTCTCCAAGCTGCAAGAGTCCAGTATCTTTGAGTACAAATTGCATCAACAGCTACTGGGAGAATAGGAACAATAGTAGAAGCTTGTTCTGGTCAGTGACATCATTGACCAACAGGATGAAGGAATTGGAAACTTTTACTAAGATGTCCTCATCACCCATGAGTCCACCTCAAGCACTGTTCTTCTCCTCGGTGCCACAACTTTTAAAGCAAGACCCCTCAGAGTCACAGAATCTTCATATTTGCAATGTTAATAATCCCTGCGAGGGGAGAATGGATGACGCAGAATTGAATTTAGAGAAGAGTGATAAGGTGTATGGCAGCTTACAGTGTTATATCAATTCTTTCGAGGATATTGGAATGAGTTGCCCATACATGGACAAAAGCTTGCCAGCTGATGAATCTAATATCAAGGCTGTGAATGATCAAGAACCTATAAACCCCTGCAGAAGCCAAAGTGTCAACCTAAATTTTCCTACTGGGCTAGTTCAATCTGGTGCCTCACTCTCCCTATCCAACATCACTGGTGAAAGCTGTGTTGCTGACTATCAAGATTGTGGATTATCGGCAGTAATTTTAAATGGGAATCCAACTTGGGATGCGAATCTGGGGACTAGTTGCTCTCAGGCAAGGGTTGAAGCCAAGAAGAGATACAATAAGAAAAAGAAAACCCGAATGTATGTATGTAATTCAACTCATTATTAA 1128 0.4317 MDKEIVVYCHSWTKEPRPDFWLFEVGFLRGVWLMGSVEPVCEFCGVARAVVYCKQDMAALCLQCDGFVHSANFISQRHVRSLLCDKCNSQPATIQCLEDEACLCESCECNVNSCLGSEHKHQPLSFYSGSPSPEEFIEIWSSSPSCKSPVSLSTNCINSYWENRNNSRSLFWSVTSLTNRMKELETFTKMSSSPMSPPQALFFSSVPQLLKQDPSESQNLHICNVNNPCEGRMDDAELNLEKSDKVYGSLQCYINSFEDIGMSCPYMDKSLPADESNIKAVNDQEPINPCRSQSVNLNFPTGLVQSGASLSLSNITGESCVADYQDCGLSAVILNGNPTWDANLGTSCSQARVEAKKRYNKKKKTRMYVCNSTHY* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0492 375 ProSiteProfiles Zinc finger B-box type profile. 36 83 IPR000315 GO:0008270
Vvi19g0492 375 ProSiteProfiles Zinc finger B-box type profile. 79 124 IPR000315 GO:0008270
Vvi19g0492 375 CDD Bbox1_BBX-like 40 83 - -
Vvi19g0492 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 40 368 - -
Vvi19g0492 375 SMART bboxneu5 84 124 IPR000315 GO:0008270
Vvi19g0492 375 SMART bboxneu5 36 83 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0492 Vvi-Chr19 5407427 5410337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0492 36 368 C2C2-CO-like Transcription Factor Family AT3G21880 34.302 1.31e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0492 - - vvi:100258828 689.108