Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0490 ATGGTTTCTCCAGAAGCCACCAATTGGCTGTACGAGTACGGGCTCATCGAGGACATCCCTGTCCCTGATTCAAACTTCGCTAATACGAATTCAGGGTTCGCCTGGACTCCTGTGCAGGCCTTGAACACTTCTGCTAATGTCAGTGGGGAAATTGATGGTTCATTTGGGGACTCTGACGGCATTAAGGAAACTGGATCAAAGAAGAGGGTGAGATCTGAATCATGTGGTGCATCTAGCTCGAAGGCATGTAGGGAGAAGTTGCGGAGGGACAGGCTAAATGACAAGTTTATGGAATTGGGTTCTATCCTGGAGCCTGGAAGGCCTCCAAAAACAGACAAGTCTTCTATTTTGATTGATGCAGTTCGAATGGTAACTCAGTTACGAGGTGAGTCGCAGAAGTTGAAGGACTCAAATTCTAGTCTCCAGGAGAAGATTAAAGAATTGAAGGCCGAGAAGAATGAGCTTCGTGATGAGAAGCAAAGGCTAAAGGCCGAGAAAGAGAAACTGGAGCAGCAACTGAAAGCAATGAATGCTCAACCTAGTTTCCTGCCTCCCGTTCCTTCAATCCCTGCTGCATTTGCAGCTCAAGGCCAAGCTGGCGGCAACAAGTTGGTTCCATTCATCGGCTACCCAGGAGTTGCTATGTGGCAATTCATGCCACCTGCTGCAGTTGATACCTCACAAGATCATGTGCTCCGTCCACCAGTTGCTTAA 714 0.4804 MVSPEATNWLYEYGLIEDIPVPDSNFANTNSGFAWTPVQALNTSANVSGEIDGSFGDSDGIKETGSKKRVRSESCGASSSKACREKLRRDRLNDKFMELGSILEPGRPPKTDKSSILIDAVRMVTQLRGESQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKAMNAQPSFLPPVPSIPAAFAAQGQAGGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0490 237 FunFam Transcription factor bHLH34 67 125 - -
Vvi19g0490 237 CDD bHLH_AtILR3_like 81 156 - -
Vvi19g0490 237 Coils Coil 124 179 - -
Vvi19g0490 237 PANTHER BHLH TRANSCRIPTION FACTOR 5 237 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vvi19g0490 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 152 IPR036638 GO:0046983
Vvi19g0490 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983
Vvi19g0490 237 Pfam Helix-loop-helix DNA-binding domain 80 127 IPR011598 GO:0046983
Vvi19g0490 237 MobiDBLite consensus disorder prediction 55 79 - -
Vvi19g0490 237 CDD bZIP 142 174 - -
Vvi19g0490 237 Gene3D arf6 gtpase in complex with a specific effector, jip4 126 180 - -
Vvi19g0490 237 Gene3D - 66 125 IPR036638 GO:0046983
Vvi19g0490 237 SMART finulus 82 133 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0490 Vvi-Chr19 5400807 5404480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0490 1 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 71.130 9.58e-116 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi19g0490 HLH 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0490 - - vvi:100258884 453.366