LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi19g0484	ATGTTAGATTCCCTGCCACCTGAACCACCTGCTCCTCTGAAGCCACCTCCTGGCAAGGCACCTCCTCCTCCTCCACCTGTACCATCTTCCTCTCTGAAACCTTCTTCTGGTAGCAATGGTCCCTCTCCTCCACCACCTAAACCTCCTGGCACAAGGCCTGGTCCTCCCCCACCGCCTCCTCCAAAGAGCGGTCCCCCACCACCTCCTCCAAAGAGCGGTGTCCCACCGCCTCCTCCAAAGAGCGGTGTCCCACCGCCACCTCCAAAGAGCGGTGTCCCACCGCCACCTCCAAAGAGCGGTGTCCCACCGCCACCTCCAAAGAGTGGTGTCCCACCACCGCCTCCAAAGAGTGGTCTCCCAATGCCACCTCGGCCACCCCAACCTATAGGTACAGGTTTAAAGGCATCTCAACCATCAACTTCTGCACCAAATGCTCCTAGTGAAGGAGGTGTCTCAGGGAGTGAAGCTGATGCTCCTAAGACCAAGCTAAAGCCATTCTTCTGGGATAAGGTTCTAGCAAACCCTGATCATTCAATGGTTTGGCATCAAATAAAATCCGGGTCATTCCAGTTCAGTGAGGAGATGATTGAAACTTTATTTGGGTATGCTCCTCCAGAAAAAAACAAAACTGTGCGCAAGGAGTCTTCTGCCCAAGATTCTTCTAGCCAGTATATTCAACTTATCGATTCAAAAAAATCACAAAATTTAGCTATTCTTCTACGGGCATTGAATGTGACAACAGAAGAATTTTGTGATGCCATTCAGGAAGGAAATGAGCTTCCTGTGGAGCTGCTTCAGACGTTATTGAAGATGGCACCCACAGCAGAAGAAGAATTAAAACTTAGGTTATTCAGTGGCAACCTTTCCCAACTTGGGCCTGCAGAGCGGTTCCTCAAAGTCTTGGTCGACATCCCATTTGCCTTTAAACGGCTTGAATCATTACTTTTCATGGGTTCTCTTCAGGAGGACATCTCGATGCTTAAAGAATCCTTTGCAACTCTAGAGGCTGCTTGTAAGGAACTCAAAAGCAGTCGGCTGTTCCTCAAACTTCTAGAGGCTGTTTTAAAAACTGGCAATCGCATGAATGATGGAACATTTCGTGGTGGTGCACAAGCATTTAAACTTGACACGCTTCTGAAACTAGCAGATGTAAAGGGAGTAGATGGCAAGACCACCCTATTGCACTTTGTTGTTCTGGAGATAATTCGCTCTGAAGGTGTACGGGCAGTTCGTGCAGCTAGAGAAAGTCGGAGCTTGTCCAGCATCAAATCTGATGATCTCCTGGAGGACCCTTCCCAAGATTCTGAAGAGCACTATCGTAGCCTTGGTCTTCAGGTGGTTTCAGGATTGAGTGATGAGCTTGAAAACGTCAGGAAAGCCTCAGTTTTAGATACTGATGGCTTAAAAGAAACTGTCGCCAAAGTTGGCAATGAACTGCTAAAAACCCGTAATTTCCTGAATTCAGATATGAGGAATATAGACAACAAAAATGGTTTTTGCCAAACACTAGAGAGTTTTGTGCAGCATGCTGAGGTTGACATCACATGGCTACTGGAGGAAGAAAAAAGAATAACAGCTTTGGTGAAGAGCACGATTGATTACTTCCATGGGAATGCAGGGAAGGATGAGGGCTTGAGATTGTTTGTTATAGTTCGGGATTTCCTAATAATGTTAGACAAGGCATGCAAACAGGTGAGAGATGCTCCAAAGAAGCCTAGGCCACAGAAGAAAGAGGTTCCTACAGCGCAACCTTCTTCTGATACCCGGCAGCCAGCTTCTCCTGATATTCGCCAGAAGCTTTTTCCGGCGATAGTGGATCGGCGGATGGATTATTCTAGTTCAGATGAGGAGAGTCCTTAG	1860	0.4747	MLDSLPPEPPAPLKPPPGKAPPPPPPVPSSSLKPSSGSNGPSPPPPKPPGTRPGPPPPPPPKSGPPPPPPKSGVPPPPPKSGVPPPPPKSGVPPPPPKSGVPPPPPKSGVPPPPPKSGLPMPPRPPQPIGTGLKASQPSTSAPNAPSEGGVSGSEADAPKTKLKPFFWDKVLANPDHSMVWHQIKSGSFQFSEEMIETLFGYAPPEKNKTVRKESSAQDSSSQYIQLIDSKKSQNLAILLRALNVTTEEFCDAIQEGNELPVELLQTLLKMAPTAEEELKLRLFSGNLSQLGPAERFLKVLVDIPFAFKRLESLLFMGSLQEDISMLKESFATLEAACKELKSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKGVDGKTTLLHFVVLEIIRSEGVRAVRAARESRSLSSIKSDDLLEDPSQDSEEHYRSLGLQVVSGLSDELENVRKASVLDTDGLKETVAKVGNELLKTRNFLNSDMRNIDNKNGFCQTLESFVQHAEVDITWLLEEEKRITALVKSTIDYFHGNAGKDEGLRLFVIVRDFLIMLDKACKQVRDAPKKPRPQKKEVPTAQPSSDTRQPASPDIRQKLFPAIVDRRMDYSSSDEESP*	620

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi19g0484	619	MobiDBLite	consensus disorder prediction	565	619	-	-
	Vvi19g0484	619	PRINTS	Proline rich extensin signature	49	70	-	-
	Vvi19g0484	619	PRINTS	Proline rich extensin signature	34	46	-	-
	Vvi19g0484	619	PRINTS	Proline rich extensin signature	9	25	-	-
	Vvi19g0484	619	MobiDBLite	consensus disorder prediction	38	129	-	-
	Vvi19g0484	619	PANTHER	FORMIN-RELATED	86	615	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Vvi19g0484	619	SMART	it6_source	153	573	IPR015425	-
	Vvi19g0484	619	MobiDBLite	consensus disorder prediction	579	593	-	-
	Vvi19g0484	619	Pfam	Formin Homology 2 Domain	155	558	IPR015425	-
	Vvi19g0484	619	MobiDBLite	consensus disorder prediction	601	619	-	-
	Vvi19g0484	619	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	166	573	-	-
	Vvi19g0484	619	MobiDBLite	consensus disorder prediction	1	31	-	-
	Vvi19g0484	619	Gene3D	Formin, FH2 domain	158	592	IPR042201	-
	Vvi19g0484	619	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	153	584	IPR015425	-
	Vvi19g0484	619	MobiDBLite	consensus disorder prediction	132	148	-	-
	Vvi19g0484	619	MobiDBLite	consensus disorder prediction	1	158	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi19g0484	Vvi-Chr19	5361561	5366800	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi19g0484	157	610	FH2 protein (formin) Gene Family	AT5G54650	69.147	0.0	628

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi19g0484	-		-	vvi:100260550	974.156