Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0480 ATGCCAACAGTTTGGCTTTCCCTGAGGAGATCTCTGCATTGCAAATCAGAGCCATCAGATGTCCATGATCCAAAGGCCAGGAGACAACTGAGCACAATCTTGACTAAAAAACCATGCAGGTCTGGTTGTTCAAGGTCTATAGCAAATCTGAAAGATGTCATCCATGGAAGTAAGAGACACATGGAGAAGCCACCAAGTTGCAGCCCAAGATCTATTGGGAGCAGTGAATTTCTAAACCCAATAACCCATGAAGTGATTCTCAGCAATTCAAGGTGTGAGCTTAAAATCACTGGTTTTGGTGGTTTCCAAGAAGGCGGTGGTGGTGGTGGTGGTGGGGGTGTTGGGACTGGTGGTGGCTCAACCTTTGTGGGTACTTTAAGACCTGGTACACCTGGCCCTGGAGGCCACCCTACAATGCACTATTTCAAGAGCCCATCAACTCCTCCAAGAAAGTCCCCTTTTCTTTTATCAGATAGAGAAGGGTCTGGATTTGGGGGTTCTACCATTTTTGGGGGTGGAAGTGGAGCTATTCATTCAAACAATAGGGCTTCCCTTGACACAGATTCTAATGGGACTTCAGCAGTCACATGCCATAAGTGTGGTGAGCAGTTTAGCAAGTGGGAAGCTGTTGAAACTCATCATCTCTCTAAGCATGCAGTTACTGAACTTGTGGAAGGCGACTCATCAAGGAAAATCGTTGAAATAATATGCCGTACAAGTTGGTTGAAATCTGAGAATCATTGTGGCAGAATTGAGAGGGTGTTGAAGGTTCACAACATGCAGAAGACTCTTGGTCGATTTGAAGAATATAGGGAAATGGTGAAGACAAAAGCCAGCAAACTCCCCAAGAAACATCCACGCTGCCTAGCCGATGGGAATGAGCTCCTGAGGTTCTATGGCACAACCATGACTTGTGCGCTTGGGGTTAATGGTTCCTCCAATCTCTGCATATCAGATAAATGCTGTGTTTGTAGAATTATAAGACATGGGTTCTCTGCTAAGAAGGAGCTCAAGGGTGGGATAGGGGTTTTCACCACTTCCACAAGTGGGAGAGCTTTTGAATCTATAGAAGTCTATGACGAAGATCCATCTATAAGGAAGGCATTGATAGTTTGCAGAGTGATTGCTGGAAGGGTTCATAGGCCCCTGGAGAACATTCAAGACATGGCTGGCCAATCCGGGTTTGATTCATTGGCTGGAAAAGTGGGTCTATATTCAAATATTGAGGAGCTCTATTTGCTGAATCCTAGAGCTCTCCTTCCTTGCTTTGTGGTAATCTGCAAACCTTGA 1290 0.4543 MPTVWLSLRRSLHCKSEPSDVHDPKARRQLSTILTKKPCRSGCSRSIANLKDVIHGSKRHMEKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGFGGFQEGGGGGGGGGVGTGGGSTFVGTLRPGTPGPGGHPTMHYFKSPSTPPRKSPFLLSDREGSGFGGSTIFGGGSGAIHSNNRASLDTDSNGTSAVTCHKCGEQFSKWEAVETHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENHCGRIERVLKVHNMQKTLGRFEEYREMVKTKASKLPKKHPRCLADGNELLRFYGTTMTCALGVNGSSNLCISDKCCVCRIIRHGFSAKKELKGGIGVFTTSTSGRAFESIEVYDEDPSIRKALIVCRVIAGRVHRPLENIQDMAGQSGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0480 429 FunFam C2H2-like zinc finger protein 219 428 - -
Vvi19g0480 429 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 427 - -
Vvi19g0480 429 SUPERFAMILY ADP-ribosylation 220 428 - -
Vvi19g0480 429 Gene3D - 210 428 - -
Vvi19g0480 429 ProSitePatterns Zinc finger C2H2 type domain signature. 197 218 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0480 Vvi-Chr19 5329128 5331056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0480 1 429 C2H2 Transcription Factor Family AT5G54630 65.591 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi19g0480 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0480 - - vvi:100260605 808.905