Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0476 ATGAAAGGCGAGTCATCGGGACTGATAATCGGGATTTCCATAGGGTTGGTAATTGGAGTGCTTTTGGCTATATTGGCCTTGTTCTGCTTTAGATACCATAGGAAGCGATCACAGATAGGGAATAGCAGTTCCAGGAGGGCTGCAACCATCCCTATCCGATCAAATGGAGCTGATTCTTGTACTATATTATCGGACTCCACCATCGGTCCGGATTCACCCAAAGCATCTGGACGGAATGGCATGTCCTTTTGGCTAGAAGGATTTAAGAGGAGTAACGTGGTTTCTGTTTCTGGGATACCCGAGTACTCTTACAAGGATCTGCAAAAAGCGACATATAATTTTACAACATTGATAGGACAAGGTGCATTTGGTCCTGTTTATAAAGCTCAGATGTCAACCGGTGAGACGGTTGCTGTTAAAGTGCTTGCAACTGACTCTAAGCAAGGGGAGAAGGAGTTCCAAACAGAGGTTCACTTACTGGGAAGGTTACATCATAGAAACCTCGTGAATTTGGTTGGGTATTGTGCCGAAAAGGGCCAGCATATGCTTATATATGTCTACATGAGTAAAGGCAGTTTGGCTTCTCATTTGTATGATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAGATGTGGCAAGGGGCTTGGAGTATCTTCATGATGGGGCTGTTCCTCCTGTCATACACCGGGACATCAAATCATCCAATATTCTATTGGACCAGTCCATGAGAGCAAGGGTTGCTGATTTTGGGCTTTCGAGGGAAGAGATGGTTAGCAAACATGCATCTAATATACGAGGAACTTTTGGATATCTTGATCCTGAGTATGTATCAACAAGGGCCTTCACTAAGAAGAGTGATGTTTACAGTTTTGGGGTATTGCTTTTTGAACTTATTGCTGGCCGGAATCCTCAACAGGGGCTCATGGAATATGTTGAGCTTGCAGCAATGAATACTGAGGGGAAAGTTGGATGGGAGGAAATTGTGGATTCCCGTCTTGATGGTAAATTTGATACGCAAGAACTCAATGACATGGCAGCTCTTGCATACAAATGTATCAACCGTGTTCCAAAAAAGCGACCGTCCATGAGGGATATAGTGCAAGTTTTGTCAAGGATCCCAAAAATGAGGCATAGCAGGAAGCATCATACGCAATCCTTGTCTAGCACAGCCAATGACATTGCCATTGATGTTGATCAACCAGACAGTCACACTCCAGTCAGTGAACACAAGAGGGAGGAGTCCATGGACAGCACTGCTGACACCTTTGAAGTTTAA 1293 0.4408 MKGESSGLIIGISIGLVIGVLLAILALFCFRYHRKRSQIGNSSSRRAATIPIRSNGADSCTILSDSTIGPDSPKASGRNGMSFWLEGFKRSNVVSVSGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVHLLGRLHHRNLVNLVGYCAEKGQHMLIYVYMSKGSLASHLYDEKYEPLSWDLRIYIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVSKHASNIRGTFGYLDPEYVSTRAFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLDGKFDTQELNDMAALAYKCINRVPKKRPSMRDIVQVLSRIPKMRHSRKHHTQSLSSTANDIAIDVDQPDSHTPVSEHKREESMDSTADTFEV* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0476 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Vvi19g0476 430 SUPERFAMILY Protein kinase-like (PK-like) 100 387 IPR011009 -
Vvi19g0476 430 PANTHER OS01G0750732 PROTEIN 3 391 - -
Vvi19g0476 430 Pfam Protein tyrosine and serine/threonine kinase 114 375 IPR001245 GO:0004672|GO:0006468
Vvi19g0476 430 CDD STKc_IRAK 118 378 - -
Vvi19g0476 430 Gene3D Transferase(Phosphotransferase) domain 1 188 403 - -
Vvi19g0476 430 Gene3D Phosphorylase Kinase; domain 1 87 187 - -
Vvi19g0476 430 MobiDBLite consensus disorder prediction 402 430 - -
Vvi19g0476 430 FunFam calcium/calmodulin-regulated receptor-like kinase 1 188 397 - -
Vvi19g0476 430 ProSiteProfiles Protein kinase domain profile. 112 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0476 430 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 86 187 - -
Vvi19g0476 430 MobiDBLite consensus disorder prediction 408 424 - -
Vvi19g0476 430 SMART serkin_6 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0476 Vvi-Chr19 5304883 5310154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0476 29 375 Glycoside Hydrolase AT3G07070 39.726 4.71e-75 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vvi19g0476 PK_Tyr_Ser-Thr 6.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0476 - - vvi:100245235 830.476