Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0475 ATGGACTCGCGCCAGATTTTTGGATACAGTGTGACTGGTGCGGATCTATCCTTCACATCTTCCCATCCTACAGTCCCTTCGATACCTAATCGCCTATTTGGGTCCTTGAAATTTGATCTTGGGAACTCACCGAACTCTCCTTTTTCAAATCTGTTTGACTGTGACACTCTTACTACATTTAGCGATAGCCAGGAGCAGCACAGCTCCACGGAGAATCTTTCAGAACTCAGTGCTTCTTGTTCTTCAGTTGAAACCAACAGTTATTTTAACCATTTAAGTCCTTCTGTGGGCTGTCGGAGAGATAGTCTACAGGGCTATTCTAGTGGAACTTCACTTTTACAGAATGCAAGTCCTTGCCACAACATAAAACACGCTCTGCTGGAATTAGAATCTGCTCTTATGGCGCCTGATGCAGATGAAGTGACCACGCCAAGTCCTTCTCTTGGGGAAGATAGGGGACCACAGATACAGGTTCCAACACCAAGGGCATGGAGCCAAGAGGCCCAGGGGTCACTTGTGCTCCAACCTCAGCCATCCTTTTCTTCTAGTTATAGGAAGTTCAGTGATGGAGTTCACATTGAGAAACGCCAGAAGGCAATGGAAGAAGGATCTTTGCAGTCTAATCCACCAGGAAATCTTAAGGAATTGCTTATTGAATGTGCTAGAGCTCTGTCCGAGAATAGATTAGATGATTTTAAGAAGTTGGTTGAAAAGGCCAGGGGTGCTGTGTCTATTAGTGGTGAGCCAATCCAGCGTCTTGGTGCTTACTTGGTAGAAGGGCTAGTAGCAAGGACAGAGGCATCAGGCAACAACATTTACCATGCCCTCAGGTGTAGAGAGCCTGAAAGCAAGGACTTGCTTTCTTACATGCAGATCCTGTACGAAATCTGCCCTTACTTAAAGTTTGGATACATGGCAGCTAATGGGGCCATTGCTGAAGCCTGCAGAAATGAGGACCGCATCCACATCATAGACTTCCAAATTGCTCAAGGGACCCAATGGGTTACACTCTTACAAGCACTTGCAGCAAGACCAAGTGGGGCACCTCGTGTGCGGATCACAGGGATTGATGACCCTGTTAATAAGTATGCTCGTGGTGCTGGATTGGATGCAGTTGGGAAACGGCTAGCAGCAATTTCTGAGAAATTCAAAATTCCTGTAGAGTTCCATCCAGTGCCTGTTTTTGCTCCTGATATAACACAGGAAATGCTGGATGTGAGACCAGGTGAGGCTCTGGCTGTGAACTTTCCCCTCCAGCTCCACCACACCCCTGATGAGAGTGTTGATGTGAACAACCCAAGGGATGAGCTTCTGAGAATGGTGAAGTCACTTTCTCCTAAAGTGACCACTTTGGTGGAGCAAGAATCAAACACAAACACAACCCCTTTTTTCACTAGGTTCATAGAAACTCTAGACTACTACTCAGCAATGTTCGAGTCAATTGATGTGGCCTTGCCCAGGGAGAGAAAGGAGCGTATCAATGTAGAGCAGCACTGTTTAGCAAGGGATATTGTTAACATTATTGCTTGTGAGGGCAAGGAAAGGGTGGAGCGTCATGAGCTCTTCGGAAAGTGGAAATCCAGGTTGACAATGGCGGGTTTCCGGCAATACCCACTGAGCACTTACGTTAACTCAGTGATAAGGACCTTGCTTAGGTGCTATTCAGAGCATTATACCTTGGTGGAAAGGGATGGGGCAATGCTGTTGGGGTGGAAGGACAGGAACTTGGTATCAGCTTCGGCCTGGTATTGA 1752 0.468 MDSRQIFGYSVTGADLSFTSSHPTVPSIPNRLFGSLKFDLGNSPNSPFSNLFDCDTLTTFSDSQEQHSSTENLSELSASCSSVETNSYFNHLSPSVGCRRDSLQGYSSGTSLLQNASPCHNIKHALLELESALMAPDADEVTTPSPSLGEDRGPQIQVPTPRAWSQEAQGSLVLQPQPSFSSSYRKFSDGVHIEKRQKAMEEGSLQSNPPGNLKELLIECARALSENRLDDFKKLVEKARGAVSISGEPIQRLGAYLVEGLVARTEASGNNIYHALRCREPESKDLLSYMQILYEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWVTLLQALAARPSGAPRVRITGIDDPVNKYARGAGLDAVGKRLAAISEKFKIPVEFHPVPVFAPDITQEMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDELLRMVKSLSPKVTTLVEQESNTNTTPFFTRFIETLDYYSAMFESIDVALPRERKERINVEQHCLARDIVNIIACEGKERVERHELFGKWKSRLTMAGFRQYPLSTYVNSVIRTLLRCYSEHYTLVERDGAMLLGWKDRNLVSASAWY* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0475 583 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 165 579 IPR005202 -
Vvi19g0475 583 Pfam GRAS domain family 213 582 IPR005202 -
Vvi19g0475 583 MobiDBLite consensus disorder prediction 138 158 - -
Vvi19g0475 583 ProSiteProfiles GRAS family profile. 204 583 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0475 Vvi-Chr19 5276148 5277899 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0475 212 582 GRAS Transcription Factor Family AT5G48150 66.129 1.97e-178 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi19g0475 GRAS 8.3e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0475 - - vvi:100267541 1169.07