Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0459 ATGGCGATGAGAGCAGCGGCGGCGGCCCCTCGCAGCTTGAGGCGGCTATTCTCAACCTCCACCTTCATTCCTCCGCCGATCACTGCGGCCACTCCTGCCACTCCTCCGGCTGAGCCCTCCACCAATCTTTTCGTCTCTGGGCTTAGCAAGCGCACTACTTCAGAAGGGCTTCATGAAGCATTTTCAAAGTTTGGTCAAGTGGTCAATGCTAGAGTAGTGACTGATCGTGTATCAGGATATTCCAAGGGGTTTGGTTTTGTGAGATATGTTTCCTTAGAAGATGCCGCTGAAGGTATAAAGGGCATGGATGGCAAGGGGTGCTCCCCAAGTATCCAGATGGGCCCAATAGGCTAG 354 0.5339 MAMRAAAAAPRSLRRLFSTSTFIPPPITAATPATPPAEPSTNLFVSGLSKRTTSEGLHEAFSKFGQVVNARVVTDRVSGYSKGFGFVRYVSLEDAAEGIKGMDGKGCSPSIQMGPIG* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0459 117 SMART rrm1_1 42 114 IPR000504 GO:0003723
Vvi19g0459 117 PANTHER NUCLEOLAR PROTEIN 8 31 105 - -
Vvi19g0459 117 SUPERFAMILY RNA-binding domain, RBD 25 105 IPR035979 GO:0003676
Vvi19g0459 117 Gene3D - 11 111 IPR012677 -
Vvi19g0459 117 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 105 IPR000504 GO:0003723
Vvi19g0459 117 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 105 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0459 Vvi-Chr19 5068321 5076551 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0459 40 105 Eukaryotic Initiation Factors Gene Family AT4G34110 40.909 3.28e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0459 - - vvi:100253846 162.155