Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0449 ATGGCGGATGAGTTTCAGACCGGTATTTGCAGCGGAAACTGGTGGGATTCATCGAGGAACAGGTATGAAAGCGCTTCATCGCCTGCGTCTACTGTGCTCACGAGTGTGGGAAGCTATGCATGGCAACCGGATATGGTGGACATCAAGGCAACTAGGTCTGCTTCCATGGATTCGGTGTCGGTCTCCGGTACTACCTCCGTTGTTTTTCCGGACACCCAGAAGATGCAAGGGCCTGATTCTTCCAGTGGCGGTGGCGGCGGTGGTGGCGTGTTGGCGGATCCCAATTTGCAGATGATGGGTCTAGGCCTATCATCCCAGGCCATGGATTGGAACCAAGCGTTATTGCGCAGTGGAAAAGCTGAGAGCAGCTTCGGTTCGATGCTTCAAGATCAAGACATGAGCTCGAATTCGAATTTTAACGCAGATCAAGCTCAATGGAGGCAGAAACTATTTTCGGGGAGCTGTGAAGATTCATCAGGGACCGAGTATAAGCAAGTGAACCGGGGTTTTTCGCTGGATCAGCCGCAGTTTAGTTCCCATAGCAGCCCCGGTGAAAGTACGGTGACATGCCAGGGCCTACCGACAAGTTTTCAGGTAGATTCCTCAGTGTATGGTAGTCCTTCCACCATACTACAAGGACTATTGGGATCAGATCATCAGCAAAACCAGTCTTCCTTCGAGAACCGACCGATGAATTATCCGTATTTAGGAACCTATGGCGTTAACTCTAATGAGTTCTTGCCTTCCTGGTCTAAAGTCCCTCAATTCTTGCGAACTTCACCTCCAAAACAGCCATCGCATACCCAGTTACACTTCTCCAACAACGCGCCCTTTTGGAATGCATCCGCGGCGGCCATGGCTGCTGACAGTAGACCCAGCTTCTCACCAACCTTGCAACCTCAATTTTCCACACCTACCTTCAATGAAAAACCAAAGAATTCTTCAGAGATTCGGGACATTAGCTCAGTGGCGAAGAAAAGTAGCGGTGAAACAGGAACCAAAAGGCCACGAAGTGAGACACCATCGCCTTTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCGCCTTTCGGAAAGACTGACACAGCCTCAGTGCTCTCTGAAGCTATTGAATACATCAAGTTTCTCCATGAACAAGCTTTGAGTACTCCATACATGAAAAGTGGAGCATCCATACAACACCAGCAGAATTCTGAGAAGTCTAAGGAGCCTGAAGGACCCAGACAGGATCTCAGAAGCCGAGGACTGTGTCTAGTACCCGTTTCAAGCACCTTCCCGGTCACCCATGAGACCTCTGTTGATTTCTGGACACCTACATTTGGAGGAACATTCAGGTAG 1371 0.4953 MADEFQTGICSGNWWDSSRNRYESASSPASTVLTSVGSYAWQPDMVDIKATRSASMDSVSVSGTTSVVFPDTQKMQGPDSSSGGGGGGGVLADPNLQMMGLGLSSQAMDWNQALLRSGKAESSFGSMLQDQDMSSNSNFNADQAQWRQKLFSGSCEDSSGTEYKQVNRGFSLDQPQFSSHSSPGESTVTCQGLPTSFQVDSSVYGSPSTILQGLLGSDHQQNQSSFENRPMNYPYLGTYGVNSNEFLPSWSKVPQFLRTSPPKQPSHTQLHFSNNAPFWNASAAAMAADSRPSFSPTLQPQFSTPTFNEKPKNSSEIRDISSVAKKSSGETGTKRPRSETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQALSTPYMKSGASIQHQQNSEKSKEPEGPRQDLRSRGLCLVPVSSTFPVTHETSVDFWTPTFGGTFR* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0449 456 CDD bHLH_AtbHLH_like 344 390 IPR045239 -
Vvi19g0449 456 MobiDBLite consensus disorder prediction 67 93 - -
Vvi19g0449 456 FunFam Transcription factor bHLH123 family 348 408 - -
Vvi19g0449 456 MobiDBLite consensus disorder prediction 292 338 - -
Vvi19g0449 456 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 141 437 - -
Vvi19g0449 456 Gene3D - 348 394 IPR036638 GO:0046983
Vvi19g0449 456 MobiDBLite consensus disorder prediction 398 424 - -
Vvi19g0449 456 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
Vvi19g0449 456 SMART finulus 349 393 IPR011598 GO:0046983
Vvi19g0449 456 MobiDBLite consensus disorder prediction 290 349 - -
Vvi19g0449 456 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 392 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0449 Vvi-Chr19 4971785 4973877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0449 119 456 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 50.128 5.39e-80 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0449 - - vvi:100267585 868.611