Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0446 ATGGAGGGCTTTGCAACACTTGTACTTGTCTTCTCCATCTTAAGAGTCTCCATTGCAGTCGATACATTGACTGTAAATCAAATAATTACAGATGGTGAGACCATAACTTCAGCTGGTGGGAGCTTTGAGCTGGGTTTCTTCAGTCCGGATAGTTCCAGGAACCGATACGTGGGGATATGGTACAAGAAAGTGGCTACTAGGACAGTTGTATGGGTTGCCAACAGACAAATCCCACTCACTGCTTCATCCGGAATTTTGAAGGTCACCGACCGGGGAACTCTTGTCATTCTCAATGGTACTAATACCACAATTTGGTCTTCTAATTCATCACGACCAGCACAGAATCCAAATGCTCAGCTTCTGGACTCTGGAAATCTTGTCATGAAAAACGGAAATGATAGTGACTCAGAAAATTTCCTGTGGCAGAGTTTTGATTATCCATGTAATACTCTTCTACCAGGCATGAAATTTGGACGGAACAGAGTGACGGGGCTGGATCGGTACCTGTCATCATGGAAGACCACTGATGACCCCTCTATAGGTAATTTCACATATCGGCTTGATCCTGGTGGATCTCCACAACTACTGGTGAGGAATGGTTCAACTGTGACCTTCCGCTCTGGACCATGGAATGGTCTACGGTTCAGTGGTTTTCCTCAATTAAGGCCAAACTCTGTTTATAGCTATGCTTTCATTTTTAATGACAAGGAGACGTATTATACTTTTGAGCTTGTCAACAGCTCAGTCATTACGAGGCTGGTGTTAAGTCCTGAAGGCTACGCTCAGCGATTCACATGGATTGATCGAACCAGTGATTGGATCCTCTACTCATCCGCACAGACAGATGACTGCGACAGTTATGCATTGTGTGGTGTGTATGGCATCTGTGAGATCAACCGTTCTCCCAAATGTGAGTGTATGAAAGGGTTTGAGCCAAAGTTCCAGAGCAATTGGGACATGGCGGATTGGTCAGATGGATGTGTTCGGAGTACTCCAATGGTTTGTCAGAAGAGTAACGGGTTTTTAAAGTACTCTGGTGTGAAATTGCCCGACACCCGCAACTCCTGGTTTAATGAAAGCATGAACCTTAAGGAATGTGCATCCCTGTGCTTGGGGAACTGCTCTTGCACTGCTTATACAAATTCAGATATCAGAGGAGGAGGAAGTGGATGCTTGCTCTGGTTTGGTGACTTGATTGATATCAGAGAGTACACTGAAAACGGGCAAGATTTCTATATAAGGATGGCTAAATCAGAATTAGATGCTTTTGCAATGACAAATAGCGGTTCCAAAGGGGCGAAGCGGAAGTGGGTCATTGTCAGCACCGTGTCAATTGTGGGAATCATTCTCCTAAGCCTGGTCCTGACCTTGTATGTCCTGAGGAAGAAGAGGCTAAGGAGAAAAGAAATCAATGAAAGAGAGGAAGATCTAGAGTTACCATTATTTGACTTGGATACAATTTTGAATGCCACTGATAACTTTTCAAACGACAATAAGCTTGGAGAGGGTGGTTTTGGACCCGTCTATAAGGGTATGTTGCAAGATGGAAAAGAAATAGCTGTGAAAAGGCTGTCAAAAGAATCTAGACAAGGACTTGATGAGTTTAAAAATGAAGTTACACACATATCCAAACTTCAGCACCGAAATCTTGTGAAGCTTCTAGGATGCTGCATTCATGGGGAAGAGAAGATGCTGATCTACGAATACATGCCCAACAAAAGTTTGGATTTCTTCATTTTTGATGGAATGCAAAGCTTGGTATTAGATTGGCCTAAACGCTTTGTCATTATCAATGGTATTGCTCGTGGGCTTCTTTATCTTCATCAAGACTCCAGGCTCAGAATAATCCATAGGGATCTTAAAGCAGACAATGTTTTACTTGATAATGAGATGAACCCAAGAATTTCAGACTTTGGCATGGCTAGAAGTTTTAGAGGAAATGAATCTGAAGCAAGAACAAAACGGGTCGTTGGAACATATGGTTACATGTCTCCAGAATATGCCATCGATGGAGTGTACTCAATAAAATCAGATGTTTTTAGCTTTGGGGTTTTGGTGCTAGAGATTGTAACTGGGAAGAGAAACAGAGGATTTAACCACCCGGATCACGCCCTTAATCTTCTTGGGCATGCATGGACACTCTATATGGAAGGTAAGCCTTTGGAACTGATTGATGCATCCATGGGGGACTCCTGTAATCAATCTGAAGTGCTACGTGCTCTCAATGTGGGACTATTATGCGTACAACGTAGTCCAGATGATCGACCAAGCATGTCTTCTGTGGTTCTGATGTTGAGTAGTGAGAGTGCATTACATCAGCCTAAAGAGCCTGGTTTTTTCACTGAAAGAAACATGCTGGAAGGAAGTTCTTCAGCAAGCAAGCATGCAATTTTTTCTGGCAATGAACACACCATTACATTAATAGAGGGTCGATAG 2436 0.4298 MEGFATLVLVFSILRVSIAVDTLTVNQIITDGETITSAGGSFELGFFSPDSSRNRYVGIWYKKVATRTVVWVANRQIPLTASSGILKVTDRGTLVILNGTNTTIWSSNSSRPAQNPNAQLLDSGNLVMKNGNDSDSENFLWQSFDYPCNTLLPGMKFGRNRVTGLDRYLSSWKTTDDPSIGNFTYRLDPGGSPQLLVRNGSTVTFRSGPWNGLRFSGFPQLRPNSVYSYAFIFNDKETYYTFELVNSSVITRLVLSPEGYAQRFTWIDRTSDWILYSSAQTDDCDSYALCGVYGICEINRSPKCECMKGFEPKFQSNWDMADWSDGCVRSTPMVCQKSNGFLKYSGVKLPDTRNSWFNESMNLKECASLCLGNCSCTAYTNSDIRGGGSGCLLWFGDLIDIREYTENGQDFYIRMAKSELDAFAMTNSGSKGAKRKWVIVSTVSIVGIILLSLVLTLYVLRKKRLRRKEINEREEDLELPLFDLDTILNATDNFSNDNKLGEGGFGPVYKGMLQDGKEIAVKRLSKESRQGLDEFKNEVTHISKLQHRNLVKLLGCCIHGEEKMLIYEYMPNKSLDFFIFDGMQSLVLDWPKRFVIINGIARGLLYLHQDSRLRIIHRDLKADNVLLDNEMNPRISDFGMARSFRGNESEARTKRVVGTYGYMSPEYAIDGVYSIKSDVFSFGVLVLEIVTGKRNRGFNHPDHALNLLGHAWTLYMEGKPLELIDASMGDSCNQSEVLRALNVGLLCVQRSPDDRPSMSSVVLMLSSESALHQPKEPGFFTERNMLEGSSSASKHAIFSGNEHTITLIEGR* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0446 811 Gene3D - 15 144 IPR036426 -
Vvi19g0446 811 Pfam S-locus glycoprotein domain 205 314 IPR000858 GO:0048544
Vvi19g0446 811 Gene3D Hepatocyte Growth Factor 332 415 - -
Vvi19g0446 811 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 570 773 - -
Vvi19g0446 811 Pfam Domain of unknown function (DUF3403) 766 811 IPR021820 GO:0004674
Vvi19g0446 811 Gene3D Phosphorylase Kinase; domain 1 457 569 - -
Vvi19g0446 811 SMART serkin_6 494 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0446 811 ProSiteProfiles Bulb-type lectin domain profile. 20 141 IPR001480 -
Vvi19g0446 811 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Vvi19g0446 811 CDD STKc_IRAK 500 765 - -
Vvi19g0446 811 Pfam PAN-like domain 335 401 IPR003609 -
Vvi19g0446 811 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 15 144 - -
Vvi19g0446 811 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 334 415 - -
Vvi19g0446 811 CDD B_lectin 26 147 IPR001480 -
Vvi19g0446 811 Pfam Protein tyrosine and serine/threonine kinase 497 763 IPR001245 GO:0004672|GO:0006468
Vvi19g0446 811 CDD PAN_AP_plant 331 416 - -
Vvi19g0446 811 CDD EGF_CA 282 313 - -
Vvi19g0446 811 Gene3D Transferase(Phosphotransferase) domain 1 570 778 - -
Vvi19g0446 811 PIRSF SRK 2 811 IPR024171 GO:0004674
Vvi19g0446 811 SMART ntp_6 336 415 IPR003609 -
Vvi19g0446 811 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 756 - -
Vvi19g0446 811 SMART blect_4 26 147 IPR001480 -
Vvi19g0446 811 ProSiteProfiles PAN/Apple domain profile. 335 416 IPR003609 -
Vvi19g0446 811 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 459 569 - -
Vvi19g0446 811 ProSiteProfiles Protein kinase domain profile. 494 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0446 811 Pfam D-mannose binding lectin 68 173 IPR001480 -
Vvi19g0446 811 SUPERFAMILY Protein kinase-like (PK-like) 477 770 IPR011009 -
Vvi19g0446 811 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 212 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0446 Vvi-Chr19 4944143 4947633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0446 461 806 Receptor kinase-like Gene Family AT4G11530 53.521 8.53e-123 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0446 PK_Tyr_Ser-Thr 3.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0446 - - vvi:100262430 1575.84