Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0445 ATGAAGGAAGTCAATAGGTGCATTCAAGGTAAAGCACAGAGGTTCACATGGGCAGATGAAAAAAATGAATGGACTCTTTATTCAACTGCACAGAAGGATGACTGTGACAGTTATGCATTATGTGGTGCATATGGAATCTGTAAGATTGACCAATCTCCCAACTGTGAGTGTATGAAAGGATTTAGGCCAAAGTTCCAAAGCAAATGGGACACGGCAGATTGGTCAGATGGATGCGTTCGAAGTACTCCACTGGATTGTCGGAAGGGTGATGGATTTGTAAAGTACTCTGGTGTGAAACTTCCAGACACGCGGAACTCCTGGGTTCATGAAAGCATGAACCTCAAGGAATGTGCATGGATGTGCTTGAGGAACTGCTCTTGCTCTGCTTATGCAAATTCAGATATCAGAGGAGGAGGAAGTGGATGCTTGCTCTGGTTTGATGACTTGATTGACATCAGGGACTTCACTCAAAATGGGCAAGACTTCTATGTAAGGATGCCTGCATCAGAATTAGGAATAGTTCTTTTAAGTCTTATCCTGACCTTGTATGTGCTCAAGAAGAGGAAGAAGCAGCAAAAGAGAAAAGGATACATGGAACACAATTCAGACGGAGGTGAAAAAATTGAAGGCCAGGAGCATCTAGAGTTACCATTATTTGACTTGGATATATTATTGAATGCCACCAATTACTTTTCTAGTGACAATAAGCTTGGAGAGGGTGGTTTTGGACCTGTCTACAAGGGAATATTGCAAGGGGGACAAGAAATAGCAGTGAAGATGTTGTCAAAAACTTCTAGACAAGGAATAAAAGAGTTCAAAAATGAAGTTGAATCCATTACAAAACTTCAGCATCGAAATCTTGTAAAGCTTCTTGGATGCTGCATCTATGGTAGAGAAAGGATGTTGATCTATGAATACATGCCCAACAAAAGCTTGGACTTGTTCATTTTTGATCAAATGCGAAGCGGGACACTAGATTGGCTTAAGCGCTTCCTCATTATCAATGGGATCGCTCGAGGCCTTCTTTATCTTCATCAAGATTCCAGACTCAGGATAATCCATAGAGATCTCAAAGCAGAAAACATTTTACTAGACAATGAAATGAGCCCCAAAATTTCAGACTTTGGAATAGCAAGAAGTTTTGGAGGAAATGAAACTGAAGCAAACACAACAAGAGTGGCTGGAACATTAGGTTATATGTCTCCAGAGTATGCAAGTGAAGGATTGTATTCTACAAAATCCGATGTTTTTAGCTTTGGTGTTTTGGTACTAGAGATTGTAAGTGGGAAGAGAAATAGAGGATTTAACCACCCAGACCACGACCTTAATCTTCTTGGGCATGCATGGACACTCTTTATAGAAGATCGGTCTTCCGAATTTATTGATGCATCAATGGGGAACATTTGCAATCTATCTGAAGTGCTGCGTTCAATCAATTTGGGTCTATTATGTGTGCAACGTTTCCCAGAGGATCGACCAAGCATGCATTATGTGGTTCTGATGTTGGGTGGTGAGGGTGCACTACCTCAGCCTAAAGAGCCTTGTTTCTTCACTGATAAGAATATGATGGAAGCAAATTCTTCCTCTGGTACTCAACCTACCATCACACTGTTGGAAGCTCGATAG 1626 0.4114 MKEVNRCIQGKAQRFTWADEKNEWTLYSTAQKDDCDSYALCGAYGICKIDQSPNCECMKGFRPKFQSKWDTADWSDGCVRSTPLDCRKGDGFVKYSGVKLPDTRNSWVHESMNLKECAWMCLRNCSCSAYANSDIRGGGSGCLLWFDDLIDIRDFTQNGQDFYVRMPASELGIVLLSLILTLYVLKKRKKQQKRKGYMEHNSDGGEKIEGQEHLELPLFDLDILLNATNYFSSDNKLGEGGFGPVYKGILQGGQEIAVKMLSKTSRQGIKEFKNEVESITKLQHRNLVKLLGCCIYGRERMLIYEYMPNKSLDLFIFDQMRSGTLDWLKRFLIINGIARGLLYLHQDSRLRIIHRDLKAENILLDNEMSPKISDFGIARSFGGNETEANTTRVAGTLGYMSPEYASEGLYSTKSDVFSFGVLVLEIVSGKRNRGFNHPDHDLNLLGHAWTLFIEDRSSEFIDASMGNICNLSEVLRSINLGLLCVQRFPEDRPSMHYVVLMLGGEGALPQPKEPCFFTDKNMMEANSSSGTQPTITLLEAR* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0445 541 Pfam S-locus glycoprotein domain 9 65 IPR000858 GO:0048544
Vvi19g0445 541 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 523 - -
Vvi19g0445 541 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 85 166 - -
Vvi19g0445 541 Pfam PAN-like domain 86 152 IPR003609 -
Vvi19g0445 541 CDD STKc_IRAK 237 502 - -
Vvi19g0445 541 ProSiteProfiles Protein kinase domain profile. 231 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0445 541 SUPERFAMILY Protein kinase-like (PK-like) 216 526 IPR011009 -
Vvi19g0445 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672|GO:0006468
Vvi19g0445 541 CDD PAN_AP_plant 82 167 - -
Vvi19g0445 541 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 193 306 - -
Vvi19g0445 541 SMART serkin_6 231 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0445 541 Gene3D Transferase(Phosphotransferase) domain 1 307 507 - -
Vvi19g0445 541 Gene3D Hepatocyte Growth Factor 83 165 - -
Vvi19g0445 541 ProSiteProfiles PAN/Apple domain profile. 86 167 IPR003609 -
Vvi19g0445 541 SMART ntp_6 87 166 IPR003609 -
Vvi19g0445 541 Gene3D Phosphorylase Kinase; domain 1 190 306 - -
Vvi19g0445 541 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 307 510 - -
Vvi19g0445 541 Pfam Protein tyrosine and serine/threonine kinase 234 432 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0445 Vvi-Chr19 4935585 4943417 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0445 164 516 Receptor kinase-like Gene Family AT4G23230 50.696 1.16e-112 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0445 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0445 - - vvi:100262430 1062.37