Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0444 ATGAATGCTCTTACAACAGTTGTATTTGTCTTCTCCAATGTATTCTCCCTCTTAAGATTTTCCATTGCAGTTGACACCATAACTGTAAATCAACCCATTAGAGATGGTGAGACCATCATTTCAGCGGATGGGAGCTTTGAACTGGGTTTCTTCAGTCCAGGTAATTCCAAGAATCGATACTTGGGGATATGGTACAAGAAAATGGCTACTGGGACGGTAGTATGGGTTGGCAATAGGGAAAATCCATTAACTGATTCATCAGGAGTTTTAAAGGTCACTCAGCAGGGAATTCTTGTTGTGGTCAACGGTACTAATGGAATTCTTTGGAATACTACTTCATCACGTTCTGCACAGGATCCAAAAGCTCAGCTTTTGGAGTCTGGAAATCTTGTTATGAGAAATGGTAATGATGGTGATCCAGAAAACTTCCTATGGCAGAGTTTTGATTACCCATGCGATACTCTTCTACCGGGCATGAAGCTCGGAAGGAATAGAGTAACAGGCCTGGATCGGTACCTGTCATCGTGGAAGAGTGCTGATGACCCTTCTAAAGGTAATTTTACTTATGGGATTGATCTAAGTGGGTTTCCACAACTATTTTTGTGGAATGGTTTAGCTGTAAAGTTTCGTGGTGGACCATGGAATGGTGTTCGATATAGTGGAATACCTCAATTAACAAACAACTCAGTTTATACATTTGTTTTTGTTTCTAATGAAAAGGAGATATATATTATTTATTCTCTTGTTAACAGCTCTGTTATTATGAGGCTTGTGTTAACTCCTGATGGTTATTCACGAAGGTTCACATGGACTGATAAAAAATATGACTGGACTCTTTACTCAACTGCACAGAGGGATGACTGTGACAATTATGCAATATGTGGAGCATATGGAATCTGCAAGATTGACCAATCTCCAAAATGTGAGTGTATGAAAGGATTTAGGCCAAAGTTCCAAAGCAATTGGGACATGGCAGATTGGTCAAAGGGATGTGTTCGAAGCAATCCACTGGATTGTCAGAAGGGTGATGGATTTGTAAAGTACTCTGGTGTGAAACTTCCAGACACGCAGAATTCCTGGTTTAATGAAAGCATGAACCTTAAGGAATGTGCTTTTCTCTGCTCAAGGAACTGCTCTTGCACTGCTTATGCAAATTCAGATATCAGAGGAGGAGGAAGTGGATGCTTGCTCTGGTTTGGTGACTTGATTGACATCAGAGACTTCACTCAAAATGGGCAAGAGTTTTATGTAAGGATGGCTGCATCAGAATTAGGATACATGGAACACGGTTCAGAAGGAGATGAAACTAATGAAGGCCGGAAGCATCCAGAGCTACAATTATTTGACTTGGATACATTATTGAATGCCACCACTAACTTTTCTAGTGACAATAAGCTTGGAGAGGGTGGTTTTGGACTTGTCTACAAGGGAATATTGCAAGAGGGACAAGAAATAGCAGTGAAGATGATGTCAAAAACTTCTAGACAAGGATTAGAAGAGTTCAAAAATGAAGTTGAATCCATTGCAAAACTTCAACATCGAAATCTTGTAAAGCTTTTTGGATGCTGCATTCATGGCAGAGAAAGGATGTTGATCTACGAATACTTGCCCAACAAAAGCTTAGACTTGTTTATTTTTGAAATGGAGATGCATCTACTTATGAACTTGTTAATAGCTCAGTCATCATGA 1689 0.3973 MNALTTVVFVFSNVFSLLRFSIAVDTITVNQPIRDGETIISADGSFELGFFSPGNSKNRYLGIWYKKMATGTVVWVGNRENPLTDSSGVLKVTQQGILVVVNGTNGILWNTTSSRSAQDPKAQLLESGNLVMRNGNDGDPENFLWQSFDYPCDTLLPGMKLGRNRVTGLDRYLSSWKSADDPSKGNFTYGIDLSGFPQLFLWNGLAVKFRGGPWNGVRYSGIPQLTNNSVYTFVFVSNEKEIYIIYSLVNSSVIMRLVLTPDGYSRRFTWTDKKYDWTLYSTAQRDDCDNYAICGAYGICKIDQSPKCECMKGFRPKFQSNWDMADWSKGCVRSNPLDCQKGDGFVKYSGVKLPDTQNSWFNESMNLKECAFLCSRNCSCTAYANSDIRGGGSGCLLWFGDLIDIRDFTQNGQEFYVRMAASELGYMEHGSEGDETNEGRKHPELQLFDLDTLLNATTNFSSDNKLGEGGFGLVYKGILQEGQEIAVKMMSKTSRQGLEEFKNEVESIAKLQHRNLVKLFGCCIHGRERMLIYEYLPNKSLDLFIFEMEMHLLMNLLIAQSS* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0444 562 ProSitePatterns Protein kinases ATP-binding region signature. 466 488 IPR017441 GO:0005524
Vvi19g0444 562 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Vvi19g0444 562 SMART ntp_6 340 419 IPR003609 -
Vvi19g0444 562 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 148 - -
Vvi19g0444 562 Gene3D - 20 148 IPR036426 -
Vvi19g0444 562 Gene3D Hepatocyte Growth Factor 336 419 - -
Vvi19g0444 562 Gene3D Phosphorylase Kinase; domain 1 434 535 - -
Vvi19g0444 562 SMART blect_4 30 151 IPR001480 -
Vvi19g0444 562 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 338 419 - -
Vvi19g0444 562 ProSiteProfiles PAN/Apple domain profile. 339 420 IPR003609 -
Vvi19g0444 562 ProSiteProfiles Protein kinase domain profile. 460 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0444 562 Pfam PAN-like domain 339 405 IPR003609 -
Vvi19g0444 562 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Vvi19g0444 562 CDD PAN_AP_plant 336 420 - -
Vvi19g0444 562 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 426 535 - -
Vvi19g0444 562 Pfam Protein tyrosine and serine/threonine kinase 463 553 IPR001245 GO:0004672|GO:0006468
Vvi19g0444 562 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 545 - -
Vvi19g0444 562 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
Vvi19g0444 562 Pfam D-mannose binding lectin 72 177 IPR001480 -
Vvi19g0444 562 SUPERFAMILY Protein kinase-like (PK-like) 443 551 IPR011009 -
Vvi19g0444 562 CDD B_lectin 30 151 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0444 Vvi-Chr19 4926818 4931945 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0444 431 547 Receptor kinase-like Gene Family AT4G38830 57.265 1.77e-33 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0444 S_locus_glycop 8.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0444 - - vvi:100247061 1065.83