Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0442 ATGGATGCTCTTACAACAGCTGTATTCATCTTCTTCTATGTATTCTCCCTCTTAAGAATCTCTGCTGCAGTAGACACCATAACTGTAAATCAACCCATTAGAGATGGTGAGACCATCACTTCAACGGGTGGGACCTTTGAATTGGGTTTCTTCAGTCCAGGTAATTCCAAGAATCGATACTTGGGGATATGGTACAAGAAAGTGGCTCCTCGGACGGTGGTATGGGTTGCCAATAGAGAAAGTCCACTAACTGATTCATCAGGAGTTTTAAAGGTCACTCAGCAGGGAATTCTTGTTGTGGTCAACGGTACTAATGGAATTCTTTGGAATTCTAATTCATCACGTTCTGCACAGGATCCAAACGCTCAGCTTTTGGAATCTGGAAATCTTGTTATGAGAAATGGCAATGATAGTGACCCAGAAAACTTCCTATGGCAGAGTTCTGATTATCCAGGCGATACTCTTCTACCAGGCATGAAGTTTGGATGGAACAGAGTAACAGGCCTGGATCGGTACCTGTCATCATGGACGAGTGCTGATGACCCTTCTAAAGGTAATTTTACTTATGGGATTGATCTAAGTGGATTTCCACAACTATTATTGAGGAATGGTTTAGATGTAGAGTTTCGTGCTGGACCATGGAATGGAGTTGGATTTAGTGGACTACCTCAAGTAATAGAAAACTCAGTTACTAAATTTCATTTTGTTTCTAATGAAAAGGAGATATATTTTTCTTATTCTCTAGTTGACAGCTCTGTTATGATGAGGCTTGTGTTAACTCCTGATGGTTATTCACGAAGGTCTACATGGACTGATAAAAAAAATGAATGGACTCTTTACACAACTGCACAGAGGGATCACTGTGACAATTATGCATTATGTGGAGGATATGGAATCTGTAAGACTGCCCAATCTCAAACATGTGACTGTATGAAAGGATTTAGGCCAAAGTTCCAAATCAATTGGGACATGGCAGACTGGTCAAGTGGATGCGTTCGAAGCACTCCACTGGATTGTCAGACGGACGGATTTGTAAAGTTATCCGGTGTGAAACTGCCAGACACGCGGAACTCCTCGTTTAATGAAAGCATGAACCTTAAGGAATGTGCTTCCCTCTGCTTGAGGAACTGCTCTTGCACTGCTTATGGAAATTTAGATATCAGAGGAGGAGGAAGCGGATGCTTGCTCTGGTTTGGTGAATTGATTGACATCAGAGACTTTACTCAAAATGGGCAAGAGTTTTATGTAAGGATGGCTGCAGCAGACTTAGATGCTTTTTCAAGCACAAATAGCAGCTCCAAGAAGAAGCAAAAGCAGGTCATTGTCATCTCTATATCAATTACTGGAATAGTTCTTTTAAGTCTAGTCCTGACCTTGTATATGCTGAAGAAGAGGAAGAAGCAGCTAAAGAGAAAAAGATACATGGAACACAATTTAGGAGATGAAGGCCATGAGCATCTAGAGTTACCATTATTTGACTTGGATATATTATTGAATGCCACTAATAACTTTTCTAGAGATAATAAGCTTGGAGAGGGTGGTTTTGGACCTGTGTATAAGGGAATATTGCAAGAAGGACAAGAAATAGCAGTGAAGATGCTGTCAAAAACTTCTAGACAAGGATTAAAAGAGTTCAAAAATGAAGTTGAATCCATTGCAAAACTTCAACATCGAAATCTTGTAAAGCTTCTTGGATGTTGCATTCAAGGTCGAGAAAGGATGCTGATCTATGAATACATGCCCAACAAAAGCTTGGACCGTTTCATTTTTGATCAGATGCGAAGTGGAGTACTAGATTGGCCTAGGCGCTTCCTCATTATCAATGGGATTGCTCGAGGCTTGCTTTACCTTCATCAAGATTCTAGACTCAGGATAATCCATAGAGATCTCAAAGCAGAAAACATTTTACTAGATAATGAAATGACACCCAAAATTTCAGACTTTGGAATAGCAAGAATTTTTGGAGGAAATGAAACTGAAGCAAACACAACAAGAGTGGTTGGAACATTAGGTTATATGTCTCCAGAGTATGCAAGTGAAGGATTGTATTCCACAAAATCCGATGTCTTTAGCTTTGGTGTTTTGGTTCTAGAGATTATAAGTGGGAAGAGAAATAGAGGATTTAACAACCCAGACCATGACCTTAATCTTCTTGGGCATGCATGGGCACTCTTTATAGAAGATAGGTCTTCAGAATTTATTGATGCATCAATGGGGAACACCTGCAATCTATCTGAAGTGCTACGCTCAATCAATTTGGGTCTATTATGTGTACAACGTTTCCCAGAGGATCGACCAAACATGCATTATGTGGTTTTGATGTTGAGTAGTGAGGGTGCATTACCTCAGCCCAAAGAGCCTTGTTTCTTCACTGATAAGAATATGATGGAAGCAAATTCTTCGTCTAGTATTCAACCCACCATCACGGTGTTGGAAGCTCGATAG 2445 0.4025 MDALTTAVFIFFYVFSLLRISAAVDTITVNQPIRDGETITSTGGTFELGFFSPGNSKNRYLGIWYKKVAPRTVVWVANRESPLTDSSGVLKVTQQGILVVVNGTNGILWNSNSSRSAQDPNAQLLESGNLVMRNGNDSDPENFLWQSSDYPGDTLLPGMKFGWNRVTGLDRYLSSWTSADDPSKGNFTYGIDLSGFPQLLLRNGLDVEFRAGPWNGVGFSGLPQVIENSVTKFHFVSNEKEIYFSYSLVDSSVMMRLVLTPDGYSRRSTWTDKKNEWTLYTTAQRDHCDNYALCGGYGICKTAQSQTCDCMKGFRPKFQINWDMADWSSGCVRSTPLDCQTDGFVKLSGVKLPDTRNSSFNESMNLKECASLCLRNCSCTAYGNLDIRGGGSGCLLWFGELIDIRDFTQNGQEFYVRMAAADLDAFSSTNSSSKKKQKQVIVISISITGIVLLSLVLTLYMLKKRKKQLKRKRYMEHNLGDEGHEHLELPLFDLDILLNATNNFSRDNKLGEGGFGPVYKGILQEGQEIAVKMLSKTSRQGLKEFKNEVESIAKLQHRNLVKLLGCCIQGRERMLIYEYMPNKSLDRFIFDQMRSGVLDWPRRFLIINGIARGLLYLHQDSRLRIIHRDLKAENILLDNEMTPKISDFGIARIFGGNETEANTTRVVGTLGYMSPEYASEGLYSTKSDVFSFGVLVLEIISGKRNRGFNNPDHDLNLLGHAWALFIEDRSSEFIDASMGNTCNLSEVLRSINLGLLCVQRFPEDRPNMHYVVLMLSSEGALPQPKEPCFFTDKNMMEANSSSSIQPTITVLEAR* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0442 814 CDD PAN_AP_plant 335 419 - -
Vvi19g0442 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
Vvi19g0442 814 PIRSF SRK 1 814 IPR024171 GO:0004674
Vvi19g0442 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 580 783 - -
Vvi19g0442 814 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Vvi19g0442 814 Gene3D Hepatocyte Growth Factor 337 418 - -
Vvi19g0442 814 CDD B_lectin 30 151 IPR001480 -
Vvi19g0442 814 ProSiteProfiles PAN/Apple domain profile. 339 419 IPR003609 -
Vvi19g0442 814 Gene3D Transferase(Phosphotransferase) domain 1 580 783 - -
Vvi19g0442 814 SMART ntp_6 339 418 IPR003609 -
Vvi19g0442 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 338 418 - -
Vvi19g0442 814 ProSiteProfiles Protein kinase domain profile. 504 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0442 814 SUPERFAMILY Protein kinase-like (PK-like) 489 804 IPR011009 -
Vvi19g0442 814 SMART serkin_6 504 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0442 814 SMART blect_4 30 151 IPR001480 -
Vvi19g0442 814 Pfam PAN-like domain 339 404 IPR003609 -
Vvi19g0442 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 148 - -
Vvi19g0442 814 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 766 - -
Vvi19g0442 814 Pfam Protein tyrosine and serine/threonine kinase 507 770 IPR001245 GO:0004672|GO:0006468
Vvi19g0442 814 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Vvi19g0442 814 Pfam D-mannose binding lectin 72 176 IPR001480 -
Vvi19g0442 814 Gene3D - 19 149 IPR036426 -
Vvi19g0442 814 Gene3D Phosphorylase Kinase; domain 1 463 579 - -
Vvi19g0442 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 466 579 - -
Vvi19g0442 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Vvi19g0442 814 CDD STKc_IRAK 510 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0442 Vvi-Chr19 4909285 4913322 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0442 434 789 Receptor kinase-like Gene Family AT4G23230 52.381 8.36e-116 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0442 PK_Tyr_Ser-Thr 4.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0442 - - vvi:104877534 1605.5