Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0441 ATGGCTGCATCAGAATTAGGATACATGGATCATAATTCAAGAGATGAAAATAATGAAGGCCAAGCGCATTTAGAGTTACCATTATTTGACTTGGATACATTATTGAATGCCACCAATAACTTTTCTAGTTACAATAAGCTTGGAGAGGGTGGTTTTGGACCTGTCTATAAGGGAATATTGCAAGAGGGACAAGAAATTGCAGTGAAGATGATGTCAAAAACTTCTAGACAAGGATTAAAAGAGTTCAAAAATGAAGTTGAATCCATTGCAAAACTTCAACACCGAAATCTTGTAAAGCTTCTTGGATGCTGCATTCATGGCAGAGAAAGAATGCTAATTTATGAATACATGCCCAACAAAAGCTTGGACTTGTTCATTTTTGATCAAATGCAAAGCGTGGTACTAGATTGGCCTAAGCGCTTCCTCATTATCAATGGGATTGCTCGAGGCCTTCTTTATCTTCATCAAGATTCCAGACTCAGGATAATCCATAGAGATCTAAAAGCAGACAATATTTTGCTAGATGAGGAGATGACTCCAAAAATTTCAGATTTTGGTATGGCTAGAAGTTTTAGAGGAAACGAAACTGAAGCAAATACAAAAAGAGTGGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATTGATGGACTATACTCAACAAAGTCGGATGTTTTTAGCTTTGGTGTTTTGGTGCTAGAGATTGTGAGTGGGAAGAGAAACAGAGGATTTTCTCACCCAGACCACTCCTTTAACCTTCTTGGGCATGCATGGACATTGTACATGGAAGGCAGGTCTATGGAGCTGATTGATACATCAGTTGGGGACATGCATGATCTATCACAAGTGTTACGTTCGATCAATGTGGGACTCTTATGCGTACAGTGTAGTCTAGATGATAGACCAAGCATGTATTCGGTGGTTCTGATGTTGAGTAGCGACGGTGCACTTCCTCAGCCTAAAGAGCCTGGTTTTTTCACTGGAAGGGAAGCAAAGTCCTCCTCAGGCAATCAGGGGCCATCTTCAGGCAATGGGGTCACCATTACAATGTTAGATGGTCGATAG 1068 0.4026 MAASELGYMDHNSRDENNEGQAHLELPLFDLDTLLNATNNFSSYNKLGEGGFGPVYKGILQEGQEIAVKMMSKTSRQGLKEFKNEVESIAKLQHRNLVKLLGCCIHGRERMLIYEYMPNKSLDLFIFDQMQSVVLDWPKRFLIINGIARGLLYLHQDSRLRIIHRDLKADNILLDEEMTPKISDFGMARSFRGNETEANTKRVVGTYGYMSPEYAIDGLYSTKSDVFSFGVLVLEIVSGKRNRGFSHPDHSFNLLGHAWTLYMEGRSMELIDTSVGDMHDLSQVLRSINVGLLCVQCSLDDRPSMYSVVLMLSSDGALPQPKEPGFFTGREAKSSSGNQGPSSGNGVTITMLDGR* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0441 355 Pfam Protein tyrosine and serine/threonine kinase 44 242 IPR001245 GO:0004672|GO:0006468
Vvi19g0441 355 CDD STKc_IRAK 47 312 - -
Vvi19g0441 355 Gene3D Phosphorylase Kinase; domain 1 6 116 - -
Vvi19g0441 355 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 14 355 - -
Vvi19g0441 355 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 117 320 - -
Vvi19g0441 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Vvi19g0441 355 ProSiteProfiles Protein kinase domain profile. 41 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0441 355 SMART serkin_6 41 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0441 355 MobiDBLite consensus disorder prediction 331 349 - -
Vvi19g0441 355 Gene3D Transferase(Phosphotransferase) domain 1 117 318 - -
Vvi19g0441 355 Pfam Domain of unknown function (DUF3403) 313 355 IPR021820 GO:0004674
Vvi19g0441 355 MobiDBLite consensus disorder prediction 322 355 - -
Vvi19g0441 355 SUPERFAMILY Protein kinase-like (PK-like) 20 312 IPR011009 -
Vvi19g0441 355 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 6 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0441 Vvi-Chr19 4900009 4902808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0441 29 354 Receptor kinase-like Gene Family AT4G23290 54.518 8.55e-122 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0441 PK_Tyr_Ser-Thr 7.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0441 - - vvi:100247061 694.115