Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0439 ATGGCATTAGACACCATAATTGTAAACCAACCCATTACAGATGGCGAGACCATCACTTCAGCTGGTGGGAGCTTTGAACTGGGTTTCTTCAATCCTGGTAATTCCAAGAACCGATACTTGGGGATATGGTACAAGAAAGCGTCTAAAAAGCCTGTAGTATGGGTTGCCAATAGAGAAAGTCCATTAACTGATTCATCCGGAGTTTTAAAGGTCACTCAGCCGGGAATTCTTGTTCTGGTGAATGGTACTAATGGAATTCTTTGGAATTCTACTTCATCACGTTCTGCACAGGATCCGAACGCTCAGCTTTTGGATTCTGGAAATCTTATTATGAGAAATGGCAATGATAGTGATCCAGAAAACTCCCTATGGCAGAGTTTTGATTACCCATGCGATACTCTTCTACCAGGCATGAAGTTTGGATGGAACAGAGTAACAGGCCTGGATCGGCACCTGTCATCGTGGAGGAGTGCAGATGACCCTTCTAAAGGTAATTTTACTTATGGGATTGATCTAAGTGGATTTCCACAACTACTTCTGAAGAATGGTTTAGCTGTAGCGTTTCGCCCTGGACCATGGAATGGTATTCGATTCAGTGGAATTCCTCAATTAACAATTAACCCAGTTTATAGTTATGAATTTGTTTCTAATGAAAAGGAGATATATTTTATGTATCATCTTGTTAACAGCTCTGTTGTTATGAGGAATGTGTTAACTCCTGATGGTTATTCACGAAGGTTCACATGGACTGATCAAAAAAATGAATGGTCTCTTTACTCAACAGCACAGAGGGATGACTGTGACACTTATGCAATATGTGGAGTAAATGGAATCTGTAAGATTAATGAATCTCCAAAATGTGAGTGTATGAAGGGATTTAGGCCAAAGATCCAAAGCAATTGGGACATGGCAGACTGGTCAAATGGATGCATTCGAAGCACTCGGCTGGATTGTCAGAAGGGTGATGGATTTGAAAAGTACTCTGGTGTGAAGCTGCCAGACACGCAGAGCTCCTGGTTTAACGAAAGCATGAACCTTAAGGAATGTGCTTCCCTGTGCTTGAGCAACTGCTCTTGCACTGCTTATGCAAATTCAGATATCAGAGGGGCAGGTAGTGGATGCTTGCTCTGGTTTGGTGGCTTGATTGACATCAGAGACTTCACTCAAAATGGGCAAGAGTTTTATGTAAGGATGGCTGCATCAGAATTAGAAGCTTCTTCAAGCATAAATAGCAGCTCCAAGAAGAAGAGAAAGCAGGTCATTGTCATCTCTATATCAATTATAGGAATAGTTCTTTTAAGTCTAGTCCTGAGCTTGTATGTGTTGAAGAAGAGGAAGAAGCAGCTAAAGAGAAAAGGATACATGGATCACAATTCAGAAGGAGGTGAAAACAATGAAGGTCAAGAACATCTAGAGTTACCATTATTTGACTTGGATACATTATTGAATGCCACCAATAACTTTTCTAGTGACAGTAAGCTTGGAGAGGGTGGTTTTGGACCTGTCTATAAGGGAATATTACAAGAAAGACAAGAAATAGCAGTGAAGATGATGTCAAAAACTTCTAGACAAGGATTCAAAGAGTTCAAAAATGAAGTTGAATCCATTGCAAAACTTCAGCACCGAAATCTTGTAAAGCTTCTAGGATGCTGCATTCATGGCAGAGAAAGAATGTTGATCTATGAATACATGCCTAACAAAAGCTTGGACTTGCTTATTTTTGATCAAAAGCGAAGCAAGGTGCTAGATTGGCCTAAGCGCTTCCTCATTATCATTGGGATTGCTCGAGGCCTTCTTTATCTTCATCAAGATTCCAGACTTAGGATAATCCATAGAGATGTCAAAGCAGAAAACATTTTATTAGATATTGAAATGAGCCCCAAAATTTCAGACTTTGGAATAGCAAGAAGTTTTGGAGGAAATGAAATTGAAGCAAGCACAACAAGAGTGGCTGGAACATTAGGTTATATGTCTCCAGAGTATGCAAGTGAAGGATTGTATTCCACAAAATCCGATGTTTTTAGCTTTGGTGTTTTGGTCCTAGAGATTATAAGTGGGAAGAGAAACAGAGGATTTAGCCACCCAGACCATGACCTTAATCTTCTTGGGCATGCATGGACACTCTACATAGAAGGTGGGTTTTCACAATTTATTGATGCATCAATAATGAACACCTATAATTTGTCTGAAGTGCTACGTTCAATCAATGTGGGCCTATTATGCGTGCAACGTTTCCCAGATGATCGACCAAGCATGCATTCTGTGGTTCTAATGTTGGGTAGTGAGGGTACATTACCTCGGCCCAAAGAGCCTTGTTTCTTTACTGATAGGAATATGATGGAAGCAAATTCTTCCTCTAGTATTCAACCCACCATCACACAATTGGAAGCTCGGTAG 2397 0.4038 MALDTIIVNQPITDGETITSAGGSFELGFFNPGNSKNRYLGIWYKKASKKPVVWVANRESPLTDSSGVLKVTQPGILVLVNGTNGILWNSTSSRSAQDPNAQLLDSGNLIMRNGNDSDPENSLWQSFDYPCDTLLPGMKFGWNRVTGLDRHLSSWRSADDPSKGNFTYGIDLSGFPQLLLKNGLAVAFRPGPWNGIRFSGIPQLTINPVYSYEFVSNEKEIYFMYHLVNSSVVMRNVLTPDGYSRRFTWTDQKNEWSLYSTAQRDDCDTYAICGVNGICKINESPKCECMKGFRPKIQSNWDMADWSNGCIRSTRLDCQKGDGFEKYSGVKLPDTQSSWFNESMNLKECASLCLSNCSCTAYANSDIRGAGSGCLLWFGGLIDIRDFTQNGQEFYVRMAASELEASSSINSSSKKKRKQVIVISISIIGIVLLSLVLSLYVLKKRKKQLKRKGYMDHNSEGGENNEGQEHLELPLFDLDTLLNATNNFSSDSKLGEGGFGPVYKGILQERQEIAVKMMSKTSRQGFKEFKNEVESIAKLQHRNLVKLLGCCIHGRERMLIYEYMPNKSLDLLIFDQKRSKVLDWPKRFLIIIGIARGLLYLHQDSRLRIIHRDVKAENILLDIEMSPKISDFGIARSFGGNEIEASTTRVAGTLGYMSPEYASEGLYSTKSDVFSFGVLVLEIISGKRNRGFSHPDHDLNLLGHAWTLYIEGGFSQFIDASIMNTYNLSEVLRSINVGLLCVQRFPDDRPSMHSVVLMLGSEGTLPRPKEPCFFTDRNMMEANSSSSIQPTITQLEAR* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0439 798 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 4 750 - -
Vvi19g0439 798 Gene3D Transferase(Phosphotransferase) domain 1 564 765 - -
Vvi19g0439 798 SMART ntp_6 319 398 IPR003609 -
Vvi19g0439 798 CDD EGF_CA 265 296 - -
Vvi19g0439 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Vvi19g0439 798 Gene3D Hepatocyte Growth Factor 315 399 - -
Vvi19g0439 798 Gene3D - 1 127 IPR036426 -
Vvi19g0439 798 ProSiteProfiles Bulb-type lectin domain profile. 3 124 IPR001480 -
Vvi19g0439 798 ProSiteProfiles Protein kinase domain profile. 488 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0439 798 SUPERFAMILY alpha-D-mannose-specific plant lectins 52 161 IPR036426 -
Vvi19g0439 798 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 127 - -
Vvi19g0439 798 CDD STKc_IRAK 494 759 - -
Vvi19g0439 798 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 317 398 - -
Vvi19g0439 798 CDD B_lectin 9 130 IPR001480 -
Vvi19g0439 798 CDD PAN_AP_plant 314 399 - -
Vvi19g0439 798 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 564 767 - -
Vvi19g0439 798 Pfam PAN-like domain 318 384 IPR003609 -
Vvi19g0439 798 SMART serkin_6 488 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0439 798 Pfam S-locus glycoprotein domain 188 296 IPR000858 GO:0048544
Vvi19g0439 798 ProSiteProfiles PAN/Apple domain profile. 318 399 IPR003609 -
Vvi19g0439 798 Pfam Protein tyrosine and serine/threonine kinase 491 689 IPR001245 GO:0004672|GO:0006468
Vvi19g0439 798 PIRSF SRK 1 798 IPR024171 GO:0004674
Vvi19g0439 798 SUPERFAMILY Protein kinase-like (PK-like) 471 772 IPR011009 -
Vvi19g0439 798 Pfam D-mannose binding lectin 52 156 IPR001480 -
Vvi19g0439 798 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 452 563 - -
Vvi19g0439 798 SMART blect_4 9 130 IPR001480 -
Vvi19g0439 798 Gene3D Phosphorylase Kinase; domain 1 452 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0439 Vvi-Chr19 4866197 4870178 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0439 420 773 Receptor kinase-like Gene Family AT4G23230 49.859 2.84e-108 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0439 PK_Tyr_Ser-Thr 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0439 - - vvi:100267473 1350.11