Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0436 ATGAGAAGCAAGGTGCTAGATTGGCCTAAGTGCTTCCTCATTATCAATGGGATTGCTCGAGGCCTTCTTTATCTTCATCAGGATTCCAGACTCAGGATAATTCATAGAGATCTTAAATCAGAAAACATTTTACTAGATAATGATATGATACCCAAAATTTCAAACTTTGGAATAACAGGAAGTTTTGGAGGAAATGAAATTGAAACAAACACAACAAGAGTGGCTAGAACATTAGGTTATATGTCTCCAGAGTATGCAAGTGAAGGATTGTATTCCACAAAATCCGATGTTTTTAGCTTTGGTGTTTTGGTTCTAGAGATTGTAAGTGGGAAGAGAAACACAGTATTTAACCACCCGTATCATGACCTTAGTCTTCTTAGGCATGCATGGACATTCTTTATGGAAGATAGGTCTTCAAAATTTATTGATGCATCAATGGGGAACACCTACAATCTATTTGAAGTGCTACGCTCAATCAATTTGGGTCTATTATGTGTGCAATGTTTCCCAGAGGATCGACCAAGCATGCATTCTGTGGTTCTGATGTTGGGTAGTGAGGGTGCACTACCTCAGCCCAAAGAGCCTTATTTCTTCACCGATATGAATATGATGGAAGGAAATTCGTCCTCTGGTACTCAATCCACAATCACACTGTTGGAAGCTTGA 666 0.3904 MRSKVLDWPKCFLIINGIARGLLYLHQDSRLRIIHRDLKSENILLDNDMIPKISNFGITGSFGGNEIETNTTRVARTLGYMSPEYASEGLYSTKSDVFSFGVLVLEIVSGKRNTVFNHPYHDLSLLRHAWTFFMEDRSSKFIDASMGNTYNLFEVLRSINLGLLCVQCFPEDRPSMHSVVLMLGSEGALPQPKEPYFFTDMNMMEGNSSSGTQSTITLLEA* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0436 221 ProSitePatterns Serine/Threonine protein kinases active-site signature. 33 45 IPR008271 GO:0004672|GO:0006468
Vvi19g0436 221 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 210 - -
Vvi19g0436 221 ProSiteProfiles Protein kinase domain profile. 1 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0436 221 SMART serkin_6 1 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0436 221 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 191 - -
Vvi19g0436 221 Pfam Protein tyrosine and serine/threonine kinase 5 180 IPR001245 GO:0004672|GO:0006468
Vvi19g0436 221 SUPERFAMILY Protein kinase-like (PK-like) 3 183 IPR011009 -
Vvi19g0436 221 Gene3D Transferase(Phosphotransferase) domain 1 1 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0436 Vvi-Chr19 4811544 4812360 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0436 6 198 Receptor kinase-like Gene Family AT4G23290 51.795 6.23e-61 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0436 PK_Tyr_Ser-Thr 2.4e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0436 - - vvi:109121536 447.973