Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0434 ATGGATCATAAATCAAAAGAAGGTGAAAACAATGAAGGCCAAGAGCATCTAGATTTACCATTATTTAACTTGGCTACATTATTGAATGCCACCAATAACTTTTCTGAGGAAAATAAGCTTGGAGAGGGTGGTTTTGGGCCTGTCTATAAGGGAATATTGCAAGAAGGACAAGAAATAGCAGTAAAGATGATGTCAAAAACTTCTAGACAAGGATTAAAAGAGTTCAAAAATGAAGTTGAATCCATTACAAAACTTCAGCACCGAAATCTTGTAAAGCTTCTTGGATGCTGCATTCATGGCAGAGAAAGATTGTTGATTTATGAATACATGCCCAACAAAAGCTTGGACTTGTACATTTTTGATCACATGCGAAGCAGGGTACTAGATTGGCCTAAACGCTTCCTCATTATCAATGGGATTGCTCGAGGCCTTCTTTATCTTCATCAAGATTCTAGACTCAGGATAATCCATAGAGATCTCAAAGCAGAAAACATTTTACTAGATAATGAAATGACCCCCAAAATTTCAGACTTCGGGATAGCAAGAAGTTTTGGAGGAAATGAAACTGAAGCAAACACAACAAGAGTGGTTGGAACATTAGGTTATATGTCTCCAGAGTATGCAAGTGAAGGATTGTATTCCACAAAATCCGATGTTTTTAGTTTTGGTGTTTTGTTGCTAGAGATTGTAAGTGGGAAGAGAAACAGAAGATTTAGCCACCCAGACCATGACCTTAATCTTCTTGGGCATGCATGGACACTCTATATAGAAGGTGGGTCTTTAGAATTTATTGATACATCAATAGTGAACACCTGCAATCTAATTGAAGTGCTACGTTCAATCAATGTGGGCCTATTATGCGTACAACGTTTCCCGGATGATCGACCAAGCATGCATTCTGTGATTCTGATGTTGGGTAGTGAGGGTGCACCACCTCGGCCCAAAGAGCCTTGTTTCTTCACTGATAGGAATATGATGGAAGCAAATTCTTCCTCTGGTATTCAACCCACCATCACGTTGTTGGAAGCTCGATAG 1035 0.3923 MDHKSKEGENNEGQEHLDLPLFNLATLLNATNNFSEENKLGEGGFGPVYKGILQEGQEIAVKMMSKTSRQGLKEFKNEVESITKLQHRNLVKLLGCCIHGRERLLIYEYMPNKSLDLYIFDHMRSRVLDWPKRFLIINGIARGLLYLHQDSRLRIIHRDLKAENILLDNEMTPKISDFGIARSFGGNETEANTTRVVGTLGYMSPEYASEGLYSTKSDVFSFGVLLLEIVSGKRNRRFSHPDHDLNLLGHAWTLYIEGGSLEFIDTSIVNTCNLIEVLRSINVGLLCVQRFPDDRPSMHSVILMLGSEGAPPRPKEPCFFTDRNMMEANSSSGIQPTITLLEAR* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0434 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Vvi19g0434 344 ProSiteProfiles Protein kinase domain profile. 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0434 344 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 11 330 - -
Vvi19g0434 344 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 110 312 - -
Vvi19g0434 344 Gene3D Phosphorylase Kinase; domain 1 2 109 - -
Vvi19g0434 344 CDD STKc_IRAK 40 305 - -
Vvi19g0434 344 SMART serkin_6 34 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0434 344 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 109 - -
Vvi19g0434 344 Pfam Protein tyrosine and serine/threonine kinase 37 234 IPR001245 GO:0004672|GO:0006468
Vvi19g0434 344 SUPERFAMILY Protein kinase-like (PK-like) 18 315 IPR011009 -
Vvi19g0434 344 Gene3D Transferase(Phosphotransferase) domain 1 110 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0434 Vvi-Chr19 4797479 4799404 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0434 30 319 Receptor kinase-like Gene Family AT4G23230 57.045 5.42e-118 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0434 PK_Tyr_Ser-Thr 6.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0434 - - vvi:100267473 675.626