Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0433 ATGGAACACAATACAGAAGGAGGTGAAACCAATGAAGGTCGGGAGCATCTAGAGATACCATTATTTGACTTGGATACATTATTGAATGCCACTAATAAGTTTTCTAGTGACAATAAGCTTGGAGAGGGTGGTTTTGGGCCTGTCTACAAGGCAAAACTGCAAGAGAGACAAGAAATAACAGTGAAGATGATGTTAAAAACTTCTAGACAAGGATTAAAAGAGTTCAAAAATGAAGTTGAATCCATTGTAAAACTTCAACATCGAAATCTTGTAAAGCTTCTTAGATATTGCATTCATGGCAGAGAAAGGATGCTGATCTATGAATACTTGCCCAACAAAAGCTTGGACTTTTTTATTTTTGGTTTGACTCTCTAA 375 0.36 MEHNTEGGETNEGREHLEIPLFDLDTLLNATNKFSSDNKLGEGGFGPVYKAKLQERQEITVKMMLKTSRQGLKEFKNEVESIVKLQHRNLVKLLRYCIHGRERMLIYEYLPNKSLDFFIFGLTL* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0433 124 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 121 - -
Vvi19g0433 124 SUPERFAMILY Protein kinase-like (PK-like) 16 123 IPR011009 -
Vvi19g0433 124 Pfam Protein tyrosine and serine/threonine kinase 37 118 IPR001245 GO:0004672|GO:0006468
Vvi19g0433 124 ProSiteProfiles Protein kinase domain profile. 34 124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0433 124 FunFam Os07g0301500 protein 1 109 - -
Vvi19g0433 124 Gene3D Phosphorylase Kinase; domain 1 3 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0433 Vvi-Chr19 4788586 4789211 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0433 12 120 Receptor kinase-like Gene Family AT4G05200 51.376 1.55e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0433 PK_Tyr_Ser-Thr 7.5e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0433 - - vvi:100260657 204.142