Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0431 ATGACCATGTTGTTGCAGCGAGACCAAGGACCAGCAAGGAGATCTGTTGCAGCAGGACGTGAGATGGTTCCATCGATAAACCCAATTAGCAGCTCTGTTATTTTGAGGCTTGTGTTAACTCCTGATGGTTATTCACGAAGATTCACATGGACTGATCAAAAAAATGAATGGACTCTTTACTCAACCACACAGAAGGATGACTGTGACAATTATGCAATATGTGGAGTATATGGAATCTGTAAGATTGATGAATCTCCAAAATGTGAGTGTATGAAGGGATTTAGGCCAAAGTTCCAAAGCAATTGGGACATGGCAGACTGGTCAAAGGGATGCGTTCGAAGTACTCCGCTGGATTGTCAAAAGGGTGATGGATTTGTAAAGTACTCTGGTGTGAAACTGCCAGACACGCGGAACTCCTGGTTTGATGAAAGCATGAACCTTAAGGAATGTGCTTCCTTGTGCTTGAGGAACTGCTCTTGCACTGCTTATGCAAATTCAGATATCAGAGGAGGAGGAAGTGGATGCTTGCTCTGGTTTGATGACTTGATTGACATCAGAGACTTCACTCAAAATGGGCAAGAGTTTTATGCAAGGATGGCTGCATCAGAATCAGAAGCTTCTTCAAGCATAAATAGTAGCTCCAAGAAGAAGAAAAAGCAGGTCATTGTCATCTCTATATCAATTACAGGAATAGTTTTTTTAAGTCCAGTCCTGATCTTGTATGTGCTCAAGAAGAGGAAGAAGCAGCTAAAGAAAAAAGATCACATGCGAAGCAGGGTACTAGATTGGCCTAAGCGCTTCCTCATTATCAATGGGATTGCTCGAGGCCTTCTTTATCTTCATCAAGATTCTAGACTCAGGATAATCCATAGAGATCTCAAAGCAGAAAACATTTTACTAGATAATGAAATGAGCCCCAAAATTTCAGACTTCGGAATAGCAAGAAGTTTTGGAGGAAATGAAATTGAAGCAAACACAACAAGAGTGGCTGGAACATTAGGTTATATGTCTCCAGAGTATGCAAGTGAAGGATTGTATTCCACAAAATCCGATGTTTTTAGCTTTGGTGTTTTGTTGCTAAAGATTGTAAGTGGGAAGAGAAACAGAGGATTTAGCCACCCAGGCCATGACCTTAATCTTCTTGGGCATGCATGGACACTCTATATAGAAGGTGGGTCTTTAGAATTTATTGATACATCAAAAGTGAACACCTGCAATCTATTTGAAGTGCTACGTTCAATCAACGTGGGCCTATTATGCATACAACGTTTCCCGGATGATCGACCAAGCATGCACTCTGTGATTTTGATGTTGGGTAGTGAGGGGGCACTACCTCGGCCCAAAGAGCCTTGTTTCTTCACTGATAGGAATATGATGGATGCAAATTCTTTCTCTGGTATTCAACCCACCATCACATTGTTGGAAGCTCGATAG 1434 0.4163 MTMLLQRDQGPARRSVAAGREMVPSINPISSSVILRLVLTPDGYSRRFTWTDQKNEWTLYSTTQKDDCDNYAICGVYGICKIDESPKCECMKGFRPKFQSNWDMADWSKGCVRSTPLDCQKGDGFVKYSGVKLPDTRNSWFDESMNLKECASLCLRNCSCTAYANSDIRGGGSGCLLWFDDLIDIRDFTQNGQEFYARMAASESEASSSINSSSKKKKKQVIVISISITGIVFLSPVLILYVLKKRKKQLKKKDHMRSRVLDWPKRFLIINGIARGLLYLHQDSRLRIIHRDLKAENILLDNEMSPKISDFGIARSFGGNEIEANTTRVAGTLGYMSPEYASEGLYSTKSDVFSFGVLLLKIVSGKRNRGFSHPGHDLNLLGHAWTLYIEGGSLEFIDTSKVNTCNLFEVLRSINVGLLCIQRFPDDRPSMHSVILMLGSEGALPRPKEPCFFTDRNMMDANSFSGIQPTITLLEAR* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0431 477 SMART serkin_6 196 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0431 477 Gene3D Hepatocyte Growth Factor 116 199 - -
Vvi19g0431 477 Gene3D Transferase(Phosphotransferase) domain 1 246 443 - -
Vvi19g0431 477 ProSiteProfiles PAN/Apple domain profile. 119 200 IPR003609 -
Vvi19g0431 477 CDD PAN_AP_plant 115 198 - -
Vvi19g0431 477 Pfam Protein kinase domain 265 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0431 477 SUPERFAMILY Protein kinase-like (PK-like) 254 438 IPR011009 -
Vvi19g0431 477 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 64 250 - -
Vvi19g0431 477 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 118 199 - -
Vvi19g0431 477 Pfam S-locus glycoprotein domain 30 98 IPR000858 GO:0048544
Vvi19g0431 477 ProSiteProfiles Protein kinase domain profile. 163 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0431 477 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 243 446 - -
Vvi19g0431 477 Pfam PAN-like domain 119 185 IPR003609 -
Vvi19g0431 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Vvi19g0431 477 SMART ntp_6 120 199 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0431 Vvi-Chr19 4729494 4734057 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0431 254 453 Receptor kinase-like Gene Family AT4G23290 55.446 4.89e-66 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0431 Pkinase 1.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0431 - - vvi:100243545 454.136