Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0429 ATGAGCCCCAAAATTTCAGACTTCGGAATAGCAAGAAGTTTTGGAGGAAATGAAACGGAAGCAAATACAACAAGAGTGGCTGGAACATTAGGTTATATGTCTCCAGAGTATGCAAGTGAAGGATTGTATTCCACAAAATCCGATGTTTTTAGCTTTGGTGTTTTGGTGTTAGAGATTGTAAGTGGGAAGAGAAACATAGGATTTAACCACCCAGATCGCAACATTAATCTTCTTGGGCATGCATGGACACTCTATAAAGAAGATAGGTCTTCAGAATTTATTGATGCATCATTGGGGAACACCTGCAATCTATCTGAAGTTATACCCATAATCAATTTGGGCCTATTATGTGTGCAACGTTTTCCAAATGATCGACCAAGCATGCATTCTGTGGTTTTGATGTTGAGTAGTGAGGGTGCACTACCTCAACCCAAAGAGCCTTGTTTCTTCACTGATAGGAGTATGATGGAAGCAAGTTCTCCATCTGGTACTCAATCCCCCATCACGTTGTTGGAAGCTCGATAG 525 0.4095 MSPKISDFGIARSFGGNETEANTTRVAGTLGYMSPEYASEGLYSTKSDVFSFGVLVLEIVSGKRNIGFNHPDRNINLLGHAWTLYKEDRSSEFIDASLGNTCNLSEVIPIINLGLLCVQRFPNDRPSMHSVVLMLSSEGALPQPKEPCFFTDRSMMEASSPSGTQSPITLLEAR* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0429 174 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 14 140 - -
Vvi19g0429 174 Gene3D Transferase(Phosphotransferase) domain 1 1 143 - -
Vvi19g0429 174 Pfam Protein tyrosine and serine/threonine kinase 4 133 IPR001245 GO:0004672|GO:0006468
Vvi19g0429 174 SUPERFAMILY Protein kinase-like (PK-like) 2 151 IPR011009 -
Vvi19g0429 174 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 159 - -
Vvi19g0429 174 ProSiteProfiles Protein kinase domain profile. 1 149 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0429 Vvi-Chr19 4722292 4722965 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0429 1 150 Receptor kinase-like Gene Family AT4G23150 49.669 5.48e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0429 PK_Tyr_Ser-Thr 2.2e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0429 - - vvi:100260657 351.288