Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0428 ATGGTCAACCAACCAAAATTGTCTTATTCTATTAAGTCAACAGGAAAATTGCAAGAGGGACAAGAAATAGCAGTGAAGATGATGTCAAAAACTTCTAGACAAGGATTAAAAGAGTTCAAAAATGAAGTTGAATCCATTGCAAAACTTCAACATCGAAATCTTGTAAAGCTTCTTGGATGTTGCATTCATGGCAGAGAAAGGATGTTGATATACGAATACTTGCCCAACAAAAGCTTGGACCTGTTCATTTTTGGTCAAATGCAAAGCATCATACTAGATTGGCCTAAACGCTTCCTCATTATCAATGGGATTGCTCGAGGCCTTCTTTATCTTCATCAAGATTCCAGACTCAGGATAATCCATAGAGACCTCAAAGCTGAAAACATTTTACTAGATGATGAAATGAGCCCCAAAATTTCGGACTTTGGAATAGCAAGAAGTTTTGGAGGAAATGAAACTGAAGCAAATACAACAAGAGTGGCTGGAACATTAGGTTATATGTCTCCAGAGTATGCAAGTGAAGGATTGTATTCCACAAAATCCGATGTTTTTAGCTTTGGTGTTTTGGTACTAGAGATTATAAGCGGGAAGAGAAACAGAGGTTTTAACCACCCAGACCATGAGCTTAATCTTCTTGGGCATGCATGGACACTTTATATAGAAGGTAGGTCTTCGGAATTTATTGATGCATCAATCGTGAACACTTGCAATCTATCGGAAGTGCTACGTTCAATCAATTTGGGTCTATTATGTGTGCAACGATTCCCATATGATCGACCAAACATGCATTCTGTGGTTTTGTTGTTGGGTAGTGAGGGTGCACTATATCAACCCAAAGAGCCTTGTTTCTTCATTGATAGGAATATGATGGAAGCAAATTCTTCTTCTAGTACTCAGTGCACCATCACACAGTTGGAAGCACGATAG 927 0.3862 MVNQPKLSYSIKSTGKLQEGQEIAVKMMSKTSRQGLKEFKNEVESIAKLQHRNLVKLLGCCIHGRERMLIYEYLPNKSLDLFIFGQMQSIILDWPKRFLIINGIARGLLYLHQDSRLRIIHRDLKAENILLDDEMSPKISDFGIARSFGGNETEANTTRVAGTLGYMSPEYASEGLYSTKSDVFSFGVLVLEIISGKRNRGFNHPDHELNLLGHAWTLYIEGRSSEFIDASIVNTCNLSEVLRSINLGLLCVQRFPYDRPNMHSVVLLLGSEGALYQPKEPCFFIDRNMMEANSSSSTQCTITQLEAR* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0428 308 Gene3D Phosphorylase Kinase; domain 1 4 73 - -
Vvi19g0428 308 SMART serkin_6 1 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0428 308 ProSiteProfiles Protein kinase domain profile. 1 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0428 308 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 74 277 - -
Vvi19g0428 308 Pfam Protein tyrosine and serine/threonine kinase 17 198 IPR001245 GO:0004672|GO:0006468
Vvi19g0428 308 Gene3D Transferase(Phosphotransferase) domain 1 74 276 - -
Vvi19g0428 308 FunFam Uncharacterized protein 8 73 - -
Vvi19g0428 308 SUPERFAMILY Protein kinase-like (PK-like) 18 285 IPR011009 -
Vvi19g0428 308 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 15 304 - -
Vvi19g0428 308 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0428 Vvi-Chr19 4714589 4721730 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0428 15 301 Receptor kinase-like Gene Family AT4G11530 54.325 4.45e-104 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0428 PK_Tyr_Ser-Thr 4.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0428 - - vvi:100260657 589.341