Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0427 ATGGAGCTACCAAGTAAGATCAACAACAACGAGAAATCACTTCAACAAGGAATTTCACCTTCAGGAAATGGTGGTTTGATTTCAAATAGCAAGCTTACTGCACTTGTGGTGGATAGTGATAGAATTTGTCAAATATTGGAGAAAGCAATTTTAGAATCTCAAGGTGTTGAGACCCAAGTTGTGGGAAGTGGGAGAGATGCTCTGGATCTCTTGGCCTCTGGGGCAACCTTCAATCTCATCATCATAGCTATGGTACTCCCAATCATGAATGGAGTTGAGACCACTAGGCGGATTCGAGCAATGGGCATTTGTAGCAAAATGTTGGGTGTTACTGCATGCTCATATGAAAGGGAGAAGCAGGCATTTCTGGATGCTGGTGTGGATGAGTTCATTGAGAAACCGCTTACTCCTCAAAAGTTAGCCTCCATTCTAAGAGAGATGCGAAATGCATGA 453 0.4305 MELPSKINNNEKSLQQGISPSGNGGLISNSKLTALVVDSDRICQILEKAILESQGVETQVVGSGRDALDLLASGATFNLIIIAMVLPIMNGVETTRRIRAMGICSKMLGVTACSYEREKQAFLDAGVDEFIEKPLTPQKLASILREMRNA* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0427 150 MobiDBLite consensus disorder prediction 1 21 - -
Vvi19g0427 150 SUPERFAMILY CheY-like 31 147 IPR011006 -
Vvi19g0427 150 CDD REC_hyHK_CKI1_RcsC-like 35 144 - -
Vvi19g0427 150 ProSiteProfiles Response regulatory domain profile. 33 148 IPR001789 GO:0000160
Vvi19g0427 150 Gene3D - 33 150 - -
Vvi19g0427 150 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 149 - -
Vvi19g0427 150 Pfam Response regulator receiver domain 35 144 IPR001789 GO:0000160
Vvi19g0427 150 SMART REC_2 32 144 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0427 Vvi-Chr19 4700623 4701638 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0427 32 150 Response Regulator Gene Family AT3G04280 33.058 4.23e-18 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi19g0427 Response_reg 3.1e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0427 - - vvi:100255587 288.885