Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0426 ATGACAAAAAGTAAAATAAAATGGACAGATCAAATGCGAGGCATTGTACTAGATTGGCCCAAGCGCTTCCTCATTATCAATGGTATTGCTCGAGGCCTTCTTTATCTTCATCAAGACTCCAGACTCAGGATAATCCATAGAGATCTCAAAGCAGAAAATGTTTTACTAGATAATGATATGAACCCAAAAATTTCGGACTTTGGAATAGCAAGAAGTTTTGGAGGGAATGAACTTGGAGCAAGCACAACAAGAGTGGCTGGAACATTAGGTTATATGTCTCCAGAGTATGCAAGTGAAGGATTGTATTCCACAAAATCCGATGTTTATAGCTTTGGTGTTTTGGTGCTAGAGATTCTAAGTGGGAAGAGAAACAGAGGATTTAGCCATCCAGACCATGACCTTAATCTTCTTGGGCATGCATGGACACTCTATATTGAAGGTGGGTCTTCAGAATTTATTGATGCATCAATAGCGAACACCTACAATCTATCTGAAGTGCTACGTTCAATCAATGTCGGCCTATTATGCGTACAACGTTTCCCAGATGATCGACCAAGCATGCATTCCGTGGTTCTGATGTTGAGTAGTGAGGGTGCACTACCTCGGCCTAAAGAGCCTTGTTTCTTCACTGATAGGAGTATGATGGAAGTAAATTCTTCCTCTGGCAGTCACACCACCATCACTCAGTTAGAAGCTCGATAG 702 0.4145 MTKSKIKWTDQMRGIVLDWPKRFLIINGIARGLLYLHQDSRLRIIHRDLKAENVLLDNDMNPKISDFGIARSFGGNELGASTTRVAGTLGYMSPEYASEGLYSTKSDVYSFGVLVLEILSGKRNRGFSHPDHDLNLLGHAWTLYIEGGSSEFIDASIANTYNLSEVLRSINVGLLCVQRFPDDRPSMHSVVLMLSSEGALPRPKEPCFFTDRSMMEVNSSSGSHTTITQLEAR* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0426 233 SUPERFAMILY Protein kinase-like (PK-like) 12 213 IPR011009 -
Vvi19g0426 233 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 10 226 - -
Vvi19g0426 233 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 2 202 - -
Vvi19g0426 233 Gene3D Transferase(Phosphotransferase) domain 1 6 200 - -
Vvi19g0426 233 ProSitePatterns Serine/Threonine protein kinases active-site signature. 44 56 IPR008271 GO:0004672|GO:0006468
Vvi19g0426 233 Pfam Protein kinase domain 25 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0426 233 ProSiteProfiles Protein kinase domain profile. 1 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0426 233 SMART serkin_6 2 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0426 Vvi-Chr19 4694353 4695212 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0426 10 209 Receptor kinase-like Gene Family AT4G23290 55.941 6.70e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0426 Pkinase 8.4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0426 - - vvi:100245275 450.284