Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0425 ATGAATTTATTTACAGAACTTGTATTTCTTTTCTCCTATGTAATCTCCATCCTAAGAATCTCCACGGCAGTTGACAGCATTACTGCAAATCAACATATTAAAGATGGGGAGACCATCATTTCAGCTGGTGGGAACTTCGAATTAGGTTTTGTCCACCTGGGTACTTCAAAGAATCAATACTTGGGGATATGGTACAAGAAAGTGACTCCTAGGACAGTGGTATGGGTTGCCAACAGAGAACTCCCAGTCACTGATTCATCCGGAGTTTTAAAGGTCACCGACCAGGGAAGTCTTGTGATTCTTAATGGGTCCAATGGACTCATCTGGTCTTCTAATTCATCGCGGTCGGCAAGGAATCCAACTGCCCAACTTTTGGATTCTGGGAATCTTGTCATAAAAAGTGGAAATGATAGTGATCCAGATAATTTCCTATGGCAGAGCTTTGATTACCCAGGCGATACTCTTTTACCAGGCATGAAGCATGGAAGGAACACGGTGACAGGCCTGGATCGGTACCTATCATCATGGAAGAGCAACGACGACCCTTCTAAAGGTGATTTTACATATGGGCTTGATCCTAGTGGATGTCCACAACTATTTCTGAGGAGCGGCTCAACTGTGATTTTCCGGTCTGGGCCATGGAATGGTATTCGATTTAATGGGTTTCCTGAATTGAGGCCAAACCCAGTTTTTAATTATTCTTTTGTTTTCAATGAGAAGGAGATGTACTTTACCTATAAGCTTGTTAATAGCTCAGTTCTTTCCAGGCTGGTGTTAAATCCTAATGGAAACGTACAGCGTTTGATATGGATTGGTCGAACCAAGAGTTGGAATGTCTACTCAACCGCATATAAGGATGACTGTGACAGCTACGCATTATGCGGAGCGTACAGCACCTGTAACATACACCGATCTCCAAGATGTGGATGTATGAAAGGATTTGTACCAAAGTTCCCATACCAATGGGACACGATGGATTGGTCAAATGGGTGTGTACGAAAAACTTCACTGGATTGTCAGAAAGGTGATGGGTTTGTAAAGTGCTCTGGTGTCAAACTTCCAGACACTAGAAACTCCTGGTTTAATGAAAGCATGAACCTCAAGGAATGTGCATCCCTGTGCTTGAGGAACTGCTCTTGCTCTGCTTATACAAATTCAGATATCAAAGGAGGAGGAAGTGGATGCTTGCTCTGGTTTGGTGATTTGATTGATGTCAAGGAGTTCACTGAAAATGGGCAAGATTTCTACATAAGGATGGCTGCATCAGAATTAGATGCCATTTCAAAAGTGACGAAGAGAAGGTGGGTCATTGTCAGCACTGTGTCAATCGCGGGAATGATTCTCTTAAGCCTAGTTGTGACCTTGTATCTTCTGAAGAAGAGGCTAAAGAGAAAAGGGACAACAGAACTCAATAATGAAGGAGCTGAAACCAATGAAAGACAAGAGGATCTAGAGTTACCATTATTTGATTTGGATACAATTTTGAATGCTACCCATAACTTTTCAAGAAACAATAAGCTTGGAGAGGGTGGTTTTGGACCTGTCTACAAGGGTATGTTGCAAGATGGAAAAGAGATAGCTGTGAAGAGGCTGTCAAAGGAATCTAATCAAGGACTTGATGAGTTTAAAAATGAAGTTATATACATTTCCAAACTTCAGCACCGAAATCTTGTGAAGCTTCTAGGATGCTGCATTCATGGGGAAGAAAAGATGTTGATCTACGAATACATGCCCAACAAAAGCTTGAATTTCTTCATTTTTGATGGAATACAAAGCATGGTACTAGATTGGCCTAAGCGCTTTGTCATTATCAATGGTATTGCTCGTGGGCTTCTTTATCTTCATCAGGACTCAAGGCTCAGAATAATCCACAGGGATCTTAAAGCAGATAATGTTTTACTTGATAATGAGATGAACCCACGAATTTCAGACTTTGGCATGGCTAGAAGTTTTGGAGGAAATGAAACTCAAGCAAGAACAAAACGAGTAGTTGGAACATATGGTTACATGTCTCCAGAATATGCCATTGATGGAGTGTACTCAGTAAAATCAGATGTTTTTAGCTTTGGGGTTTTGCTGCTAGAGATTATTAGTGGGAAGAGAAACAGAGGATTTAACCACCCAGACCATGACCTTAATCTTCTTGGGCATGCATGGACACTCTATATGGAACGTACACCTTTGGAACTGATTGATGCATCTGTGGGTGACACGTACAATCAATCTGAAGTGCTACGTGCACTCAATGTGGGACTATTATGTGTGCAACGTCATCCAGATGATCGACCAAACATGTCTTCTGTGGTTCTGATGTTGAGTAGTGAGGGTGCATTACGTCAACCTAAAGAGCCTGGTTTTTTCACTGAAAGGAATATGCTGGAAGCAGATTCTTTACAATGCAAGCATGCAGTTTTTTCTGGCAATGAACACACCATTACAATATTAGAGGGTCGATAG 2457 0.4147 MNLFTELVFLFSYVISILRISTAVDSITANQHIKDGETIISAGGNFELGFVHLGTSKNQYLGIWYKKVTPRTVVWVANRELPVTDSSGVLKVTDQGSLVILNGSNGLIWSSNSSRSARNPTAQLLDSGNLVIKSGNDSDPDNFLWQSFDYPGDTLLPGMKHGRNTVTGLDRYLSSWKSNDDPSKGDFTYGLDPSGCPQLFLRSGSTVIFRSGPWNGIRFNGFPELRPNPVFNYSFVFNEKEMYFTYKLVNSSVLSRLVLNPNGNVQRLIWIGRTKSWNVYSTAYKDDCDSYALCGAYSTCNIHRSPRCGCMKGFVPKFPYQWDTMDWSNGCVRKTSLDCQKGDGFVKCSGVKLPDTRNSWFNESMNLKECASLCLRNCSCSAYTNSDIKGGGSGCLLWFGDLIDVKEFTENGQDFYIRMAASELDAISKVTKRRWVIVSTVSIAGMILLSLVVTLYLLKKRLKRKGTTELNNEGAETNERQEDLELPLFDLDTILNATHNFSRNNKLGEGGFGPVYKGMLQDGKEIAVKRLSKESNQGLDEFKNEVIYISKLQHRNLVKLLGCCIHGEEKMLIYEYMPNKSLNFFIFDGIQSMVLDWPKRFVIINGIARGLLYLHQDSRLRIIHRDLKADNVLLDNEMNPRISDFGMARSFGGNETQARTKRVVGTYGYMSPEYAIDGVYSVKSDVFSFGVLLLEIISGKRNRGFNHPDHDLNLLGHAWTLYMERTPLELIDASVGDTYNQSEVLRALNVGLLCVQRHPDDRPNMSSVVLMLSSEGALRQPKEPGFFTERNMLEADSLQCKHAVFSGNEHTITILEGR* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0425 818 Pfam Protein tyrosine and serine/threonine kinase 504 769 IPR001245 GO:0004672|GO:0006468
Vvi19g0425 818 Gene3D Phosphorylase Kinase; domain 1 475 576 - -
Vvi19g0425 818 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 762 - -
Vvi19g0425 818 SMART serkin_6 501 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0425 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 338 419 - -
Vvi19g0425 818 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Vvi19g0425 818 CDD B_lectin 30 151 IPR001480 -
Vvi19g0425 818 CDD PAN_AP_plant 335 420 - -
Vvi19g0425 818 Pfam D-mannose binding lectin 72 177 IPR001480 -
Vvi19g0425 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 465 576 - -
Vvi19g0425 818 CDD STKc_IRAK 507 772 - -
Vvi19g0425 818 SUPERFAMILY Protein kinase-like (PK-like) 484 774 IPR011009 -
Vvi19g0425 818 ProSiteProfiles Protein kinase domain profile. 501 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0425 818 Gene3D Transferase(Phosphotransferase) domain 1 577 783 - -
Vvi19g0425 818 Pfam PAN-like domain 339 405 IPR003609 -
Vvi19g0425 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Vvi19g0425 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
Vvi19g0425 818 Pfam Domain of unknown function (DUF3403) 773 818 IPR021820 GO:0004674
Vvi19g0425 818 SMART blect_4 30 151 IPR001480 -
Vvi19g0425 818 ProSiteProfiles PAN/Apple domain profile. 339 420 IPR003609 -
Vvi19g0425 818 Gene3D Hepatocyte Growth Factor 336 419 - -
Vvi19g0425 818 Gene3D - 19 148 IPR036426 -
Vvi19g0425 818 PIRSF SRK 1 818 IPR024171 GO:0004674
Vvi19g0425 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 148 - -
Vvi19g0425 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 577 780 - -
Vvi19g0425 818 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Vvi19g0425 818 SMART ntp_6 340 419 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0425 Vvi-Chr19 4677542 4681527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0425 460 799 Receptor kinase-like Gene Family AT4G11530 54.070 5.56e-121 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0425 PK_Tyr_Ser-Thr 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0425 - - vvi:100267579 1645.56