Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0424 ATGTTGATCTATGAGTACATGCCCAACAAAAGCTTGGACTTCATTTTTGATCAAATGCAAAGCATGGTACTAAATTGGCCTAAGCGCATTGCCATTATCAATGGTATTACTCGAGGACTTCTTTATCTTCATCAAGACTCCAGGCTCAGAATAATCCACAGGGATCTTAAAGCAGATAATATTTTACTCGATAATGAGATGAGCCCCAAAATCTCAGACTTTGGCATGGCAAGAAGTTTTGGAGAAAATGATACTGAAGCAAATACCAAAAGGGTGGTCGGAACATTTGGCTACATGTCTCCAGAATATGCTAGTGATGGAGTATATTCAGTAAAATCCGATGTTTTCAGCTTTGGTGTTTTGATGCTGGAGATTGTTAGTGGGAAGAGAAACAGAGGATTTAACCATCCAGACCACTGCTTTAATCTTCTTGGACATGCATGGATACTCCATATGAAGGGCAGACCTTTAGAACTGATTGACGCATCCTTGGGGGAGGCCTATAATCAGTCTGAAGTGCTACGTGCACTCAACGTGGGACTATTATGTGTACAAAGTAATCCAGATGATCGACCAAACATGTCTTCTGTGGTTCTGATGTTGGGGAGTGAGGGTGCATTGCCTCAGCCTAAAGAGCCTGGTTTTTTCACCCAAAGGATTATGATGGAAGCAAATTCATCACTAAGCAGGATGGCAGCTTTTTCTGGTTTCAACTCATTTTGGTGTCTTCCCCAACCATAA 741 0.4157 MLIYEYMPNKSLDFIFDQMQSMVLNWPKRIAIINGITRGLLYLHQDSRLRIIHRDLKADNILLDNEMSPKISDFGMARSFGENDTEANTKRVVGTFGYMSPEYASDGVYSVKSDVFSFGVLMLEIVSGKRNRGFNHPDHCFNLLGHAWILHMKGRPLELIDASLGEAYNQSEVLRALNVGLLCVQSNPDDRPNMSSVVLMLGSEGALPQPKEPGFFTQRIMMEANSSLSRMAAFSGFNSFWCLPQP* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0424 246 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 7 209 - -
Vvi19g0424 246 ProSiteProfiles Protein kinase domain profile. 1 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0424 246 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 224 - -
Vvi19g0424 246 SUPERFAMILY Protein kinase-like (PK-like) 1 217 IPR011009 -
Vvi19g0424 246 ProSitePatterns Serine/Threonine protein kinases active-site signature. 51 63 IPR008271 GO:0004672|GO:0006468
Vvi19g0424 246 Gene3D Transferase(Phosphotransferase) domain 1 7 207 - -
Vvi19g0424 246 SMART serkin_6 2 201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0424 246 Pfam Protein tyrosine and serine/threonine kinase 1 198 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0424 Vvi-Chr19 4665736 4667112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0424 1 216 Receptor kinase-like Gene Family AT4G23290 60.274 1.80e-88 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0424 Pkinase 3.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0424 - - vri:117909137 462.996