Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0421 ATGGTCCCCTGCAGTGGTTACATGTCTCCAGAATATGCAATTGCTGGATTGTACTCGACAAAATCCGATGTTTTTAGCTTTGGTGTTTCGGTTCTAGAGATGAGTGGAAAGAGAAACAGAGGATTCTACAACCCAAACTACTACATTAACCTTCTTGGATATGCATGGACCCTCTATATGGAAGGTAGATCTTTGGAACTTATTGATGCATCAATGGGAGATACCTGCAATCTATCTGAAGTGCTACGTTCTATCCATGTTGGTCTGTTATGTGTTCAACGTTCTCCAGATGATAGGCCGAGCATGTCTTCTGTGATTCTTATGCTGGGTAGTGAGGGTGCATTACCTCAGCCCAAAAAGCCTGGTTTTTTCTGTGAGACGCCTATGCCGGAAGCAAATTCTAACCCAGATGCCTCATCATTTTCAGGCAATGAAGGCCACGATGCCATATTAGAGGTTTGA 462 0.4351 MVPCSGYMSPEYAIAGLYSTKSDVFSFGVSVLEMSGKRNRGFYNPNYYINLLGYAWTLYMEGRSLELIDASMGDTCNLSEVLRSIHVGLLCVQRSPDDRPSMSSVILMLGSEGALPQPKKPGFFCETPMPEANSNPDASSFSGNEGHDAILEV* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0421 153 Pfam Protein tyrosine and serine/threonine kinase 7 106 IPR001245 GO:0004672|GO:0006468
Vvi19g0421 153 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 134 - -
Vvi19g0421 153 ProSiteProfiles Protein kinase domain profile. 1 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0421 153 Gene3D Transferase(Phosphotransferase) domain 1 2 115 - -
Vvi19g0421 153 SUPERFAMILY Protein kinase-like (PK-like) 5 116 IPR011009 -
Vvi19g0421 153 MobiDBLite consensus disorder prediction 132 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0421 Vvi-Chr19 4614385 4614945 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0421 1 127 Receptor kinase-like Gene Family AT4G23150 48.837 4.17e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0421 PK_Tyr_Ser-Thr 6.8e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0421 - - vri:117909127 232.646