Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0419 ATGACACTAGATTGGCCTAAGCGTTTTGTCATTATCAATGGTATTGCTCGAGGGCTTCTTTATCTTCATCAAGATTCGAGATTAAGAATAATCCATAGAGACCTTAAAGCAAACAATATCTTACTAGATAGTGTGATGAACCCGAAAATTTCAGACTTTGGCATAGCTAGAAGTTTTGGAAGCGATGAAACCAAAGCAAGTACAAATAGAGTGGTTGGAACATATGGTTACATGTCTCCAGAGTATGCAATTCATGGAGTTTACTCAATAAAATCAGATGTTTTTAACTTCAGTGTTTTAGTGTTAGAGATTGTGAGCGGGAAGAGGAATAGAGGATTTCGTCACCCGGACCACTACCTTAACCTTCTTGGGCACGCATGGACACTCTATATGGAAGATAGGTATTTAGAGTTGATTGATAAATCCATAGGGGTCACCTGCAATCTACCTGAAGTGCTAAGGTCAATTAATGTGGGGCTATTATGTGTACAACGTTCTCTAGATGATCGCCCAAGCATGTCTTCTATGGTTCAAATGTTAGGTAGTGAGGGTGCATTGCCTCAACCAAAAGAGCCTGGTTTTTTCACTGAGACAAATATTCATGAAGCAAATTCTTCTTCAAGCAAACATGCACCATTTTCAGGAAACAAAAGTTCCCTTACATTTTTGGAGGCTCGATAG 681 0.3921 MTLDWPKRFVIINGIARGLLYLHQDSRLRIIHRDLKANNILLDSVMNPKISDFGIARSFGSDETKASTNRVVGTYGYMSPEYAIHGVYSIKSDVFNFSVLVLEIVSGKRNRGFRHPDHYLNLLGHAWTLYMEDRYLELIDKSIGVTCNLPEVLRSINVGLLCVQRSLDDRPSMSSMVQMLGSEGALPQPKEPGFFTETNIHEANSSSSKHAPFSGNKSSLTFLEAR* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0419 226 Pfam Protein tyrosine and serine/threonine kinase 5 180 IPR001245 GO:0004672|GO:0006468
Vvi19g0419 226 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 204 - -
Vvi19g0419 226 ProSiteProfiles Protein kinase domain profile. 1 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0419 226 ProSitePatterns Serine/Threonine protein kinases active-site signature. 30 42 IPR008271 GO:0004672|GO:0006468
Vvi19g0419 226 SMART serkin_6 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0419 226 SUPERFAMILY Protein kinase-like (PK-like) 3 180 IPR011009 -
Vvi19g0419 226 Pfam Domain of unknown function (DUF3403) 183 226 IPR021820 GO:0004674
Vvi19g0419 226 MobiDBLite consensus disorder prediction 203 226 - -
Vvi19g0419 226 Gene3D Transferase(Phosphotransferase) domain 1 1 187 - -
Vvi19g0419 226 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0419 Vvi-Chr19 4603005 4603843 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0419 1 226 Receptor kinase-like Gene Family AT4G23140 50.420 1.42e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0419 PK_Tyr_Ser-Thr 1.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0419 - - vvi:100262308 456.062