Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0418 ATGGATACCTTTACAACACTTGTAGTTTTCTTCTATGCGATCTTCATCTTAAGAGTCTCCAATGCAGGAGACACCATAACTGTTGATCTAGTAATTAGAGATGGGGAGACCATAACTTCTGTTGGTGGGAGCTTCGAACTGGGTTTTTTCAGCCCAGTTGATTCCAATAATCGATATGTGGGGATATGGTACAAGAAGGTTTCTACTAGAACTGTGGTATGGGTTGCCAACAGAGAATTTCCTCTCAGTGGCTCATCAGGAGTCCTGAAGGTCACGGACCAGGGAACTCTTGTCGTTCTCAATGGTACTAATGGCATCATTTGGTCTTCTAATTCATCGCAACCTGCAATAAATCCAAATGCGCAGCTTTTGGAGTCTGGAAATCTTGTTGTGAAGAATGGTAATGATAGTGACCCGGAAAAGTTTCTATGGCAGAGTTTTGATTATCCTTGTGATACTGTTCTACCAGGCATGAAGTTTGGAAGGAACACTGTGACAGGCTTAGATCGGTACTTATCTTCATGGAAGAGCACTGATGATCCTTCTAAAGGTAATTTTACATACCGGGTTGAGCCTAGTGGATTTCCACAACTGATTCTGAGGAGTGGCTTAGCTGTGACTTTTCGCTCTGGCCCATGGAATGGCCTTCGATTTAGTGGGTTTCCTGAAATAAGGTCAAATCCAGTTTATAAATATGCTTTTGTTGTGAATGAAGAGGAGATGTATTATACTTATGAGCTTGTTAACAGCTCTGTTATTTCGAGGCTGGTGTTAAATCCAAACGGATACGTGCAGCGTTTCACATGGATTGATCGAACACGTGGGTGGATCCTTTACTCATCTGCACAGAAGGACGACTGTGACAGTTATGCATTGTGTGGTGCATATGGCAGCTGCAACATTAACCATTCTCCAAAATGTACATGTATGAAAGGATTTGTGCCAAAGTTCCCCAATGAATGGAACATGGTGGATTGGTCAAATGGATGTGTTCAGAGCACTCCACTGGATTGTCACAAGGATGAGGGGTTTGTAAAGTACTCTGGTGTGAAACTGCCTGACACACGAAACTCCTGGTTTAATGAAAACATGAGTCTCAAGGAGTGTGCCTCTATGTGCTTAAGGAACTGCTCTTGCACTGCTTATGCAAACTCAGATATCAGGAATGGAGGAAGTGGATGCTTGCTCTGGTTTGGTGATTTGATTGATATCAGAGAGTTTGCTGAAAATGGACAAGAGTTGTATGTAAGGATGGCTGCATCAGAATTAGATGCCTTTTCTAGCTCAAATAGCAGCTCCAAGAAGAGACGAAAGCAGATCATTATCATCTCTGTATCAATTTTGGGGGTGCTTCTCCTAATCGTAGTCTTGACTTTGTACATTGTGAAGAAGAAGAAGCTAAAGAGAAACAGAAAAATTAAACACCATTTGAAAGGAGATGAAGCGAATGAAAGCCAAGAGCATCTAGAATTACCACTATTTAACTTGGCTGCATTACTGAGTGCTACTAATAACTTTTCAAGTGACAATAAGCTTGGAGAGGGTGGTTTTGGACCTGTCTACAAGGGAATATTGCAAGAAGGACAAGAAATAGCTGTAAAGAGACTGTCAAAACATTCTAGACAAGGACTAAATGAATTCAAAAATGAAGTTGAATCCATTGCGAAACTTCAGCATCGAAATCTTGTGAAGCTTCTTGGATGTTGCATTCATGGCAGTGAAAGAATGTTGATCTATGAATACATGCCCAACAAAAGCTTGGATTTCTTCATTTTTGATCCAATGCGAGGTGTGGTACTGGATTGGCCTAAGCGCTTTGTCATTATCAATGGGGTTGCTCGGGGGCTTCTTTATCTTCATCAAGACTCCAGACTAAGAGTCATCCATAGAGATCTCAAAGCCGAAAATGTTTTACTAGATAATGAGATGAGCCCAAAAATTTCAGACTTTGGCATAGCAAGAAGTTTTGGGGGAAATGAAACTGAAGCAAATACAACAAGAGTGGCTGGAACATTAGGTTACATGTCCCCAGAGTATGCAACTGAAGGATTGTATTCGACAAAATCAGATGTTTATAGCTTTGGTGTTTTGATGCTAGAGATTGTGACTGGGAAGAGGAACAGGGGATTTTTTCATCTAGACCACAGATATAACCTTCTTGGACATGCGTGGACACTCTATATGAAAGGTAGGTCTTTAGAACTTATCAATCCATCGATGGGGGATACCTGCAATCTATCTGAAGTGCTCCGCGCAATCAATGTGGGCCTACTGTGTGTACAACGTTTCCCCAATGATCGACCAAGCATGCATTCTGTGGTTCTGATGTTGGGGAGTGAGGGTGCACTGCCTCAGCCTAAAGAGCCTTGTTTTTTCACAGAAAAGAATGTAGTGGAAGCAAACCCTTTCCCAGGCGAGCACATGCTATATTCAGGAATAATTGGAAGCAAATTTTTACAAAAAATAACAATATTAATTAAAAAAATCACTTCAGCTAATTCAAAAAGTCTCATATTCAAAATGAAAACTAAGGCATCCATCCAAACAGTCCGCCGCATTCTTCATTTTCTTCTTCACTGCCACACTGATCCTAGACAAGCCCTAATCTCCTTTCTTCCACTTGCTCATAAATCTATTTCTCTTTTTCTCAGTCCCAATGAACGAGGCCATGGCTCCCTTTATACCGCAATTTCCATTGCAGCTTCTGATCGGAGAGCGGGATCCCTCTTCGAGGATCCGGACACAATGTGGTGGAGAAGTGGCAACCATGGGCGGCGGTGGAGCGATCAGCAGGTCAGTGTTGCTTTCCCCAGATTGCTTGAGGAAATGCTCTTGCCCTGCTTTTGCAGATTTAGATACGGAGGAGAAAGTTTGGTTGGAACGGAGTGA 2889 0.4202 MDTFTTLVVFFYAIFILRVSNAGDTITVDLVIRDGETITSVGGSFELGFFSPVDSNNRYVGIWYKKVSTRTVVWVANREFPLSGSSGVLKVTDQGTLVVLNGTNGIIWSSNSSQPAINPNAQLLESGNLVVKNGNDSDPEKFLWQSFDYPCDTVLPGMKFGRNTVTGLDRYLSSWKSTDDPSKGNFTYRVEPSGFPQLILRSGLAVTFRSGPWNGLRFSGFPEIRSNPVYKYAFVVNEEEMYYTYELVNSSVISRLVLNPNGYVQRFTWIDRTRGWILYSSAQKDDCDSYALCGAYGSCNINHSPKCTCMKGFVPKFPNEWNMVDWSNGCVQSTPLDCHKDEGFVKYSGVKLPDTRNSWFNENMSLKECASMCLRNCSCTAYANSDIRNGGSGCLLWFGDLIDIREFAENGQELYVRMAASELDAFSSSNSSSKKRRKQIIIISVSILGVLLLIVVLTLYIVKKKKLKRNRKIKHHLKGDEANESQEHLELPLFNLAALLSATNNFSSDNKLGEGGFGPVYKGILQEGQEIAVKRLSKHSRQGLNEFKNEVESIAKLQHRNLVKLLGCCIHGSERMLIYEYMPNKSLDFFIFDPMRGVVLDWPKRFVIINGVARGLLYLHQDSRLRVIHRDLKAENVLLDNEMSPKISDFGIARSFGGNETEANTTRVAGTLGYMSPEYATEGLYSTKSDVYSFGVLMLEIVTGKRNRGFFHLDHRYNLLGHAWTLYMKGRSLELINPSMGDTCNLSEVLRAINVGLLCVQRFPNDRPSMHSVVLMLGSEGALPQPKEPCFFTEKNVVEANPFPGEHMLYSGIIGSKFLQKITILIKKITSANSKSLIFKMKTKASIQTVRRILHFLLHCHTDPRQALISFLPLAHKSISLFLSPNERGHGSLYTAISIAASDRRAGSLFEDPDTMWWRSGNHGRRWSDQQVSVAFPRLLEEMLLPCFCRFRYGGESLVGTE* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0418 962 SUPERFAMILY Protein kinase-like (PK-like) 488 777 IPR011009 -
Vvi19g0418 962 CDD B_lectin 29 150 IPR001480 -
Vvi19g0418 962 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Vvi19g0418 962 CDD PAN_AP_plant 334 419 - -
Vvi19g0418 962 Gene3D Transferase(Phosphotransferase) domain 1 582 783 - -
Vvi19g0418 962 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 147 - -
Vvi19g0418 962 CDD STKc_IRAK 512 777 - -
Vvi19g0418 962 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 469 581 - -
Vvi19g0418 962 CDD EGF_CA 285 316 - -
Vvi19g0418 962 Gene3D Phosphorylase Kinase; domain 1 464 581 - -
Vvi19g0418 962 ProSiteProfiles PAN/Apple domain profile. 338 419 IPR003609 -
Vvi19g0418 962 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Vvi19g0418 962 ProSiteProfiles Protein kinase domain profile. 506 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0418 962 Pfam D-mannose binding lectin 71 176 IPR001480 -
Vvi19g0418 962 Pfam PAN-like domain 338 404 IPR003609 -
Vvi19g0418 962 Gene3D - 17 147 IPR036426 -
Vvi19g0418 962 Gene3D Hepatocyte Growth Factor 335 418 - -
Vvi19g0418 962 SMART blect_4 29 150 IPR001480 -
Vvi19g0418 962 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 215 IPR036426 -
Vvi19g0418 962 SMART serkin_6 506 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0418 962 Pfam Protein tyrosine and serine/threonine kinase 509 724 IPR001245 GO:0004672|GO:0006468
Vvi19g0418 962 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Vvi19g0418 962 SMART ntp_6 339 418 IPR003609 -
Vvi19g0418 962 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 582 785 - -
Vvi19g0418 962 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 768 - -
Vvi19g0418 962 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 337 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0418 Vvi-Chr19 4584565 4596221 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0418 444 791 Receptor kinase-like Gene Family AT4G23230 51.275 4.81e-119 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0418 PK_Tyr_Ser-Thr 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0418 - - vvi:109121490 1573.53