Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0415 ATGGGTGCCCTTACATTAACCCTTGTTATTGTTTTCTCCATCTTTAGAATCTCTTTTACAGTGGACACGATAGCTTTGAATCAACTTCTTAGAGATGGCGAGATCCTCACTTCAGCTGGTGGGAGCTTTGAACTGGGCTTCTTCAGACCGGATAATTCAAGCAGACGGTATTTGGGGATGTGGTACAAGAAAGTTTCTATTAGGACTGTTGTGTGGGTTGCCAACAGGGAAACTCCTCTCGCTGATTCATCAGGGGTTCTGAAGGTTACTGATCAGGGAACTCTTGCCGTTCTCAATGGTACTAATACCATTCTTTGGTCTTCTAATTCTTCACGATCTGCACGAAATCCAACTGCCCAGATTTTGGAGTCTGGAAATCTTGTCATGAAAGATGGAAATGACGACAACCCAGAAAATTTCTTATGGCAGAGCTTCGATTATCCATGCAATACTCTTCTCCCAGGGATGAAGCTTGGAAGGAACACAGTCACTGGCCTGGACCGGTACCTGTCAGCATGGAAGAGCGCTGATGACCCTTCTAAAGGTGATTTTACATATCGGCTTGATCCTAGAGGGTATCCTCAGCTAATTCTGAGGAAAGGGTCAGCTGTGACATTTCGATCGGGACCATGGAATGGTGTTCGGTTTAGCGGCTTTCCTGAGTTGGGGCCGAACTCTATTTATACGTATGAGTTTGTTTTTAATGAAAAGGAGATGTATTTTCGTTATGAGCTTGTTAACAGTTCAGTTGTTTCAAGGTTGGTGTTGAATCCTGATGGCTCCAAGCAGCGTGTCAATTGGATCGATCGAACCAATGGTTGGATCCTGTACTCATCCGCCCCAAAGGATGACTGTGACAGTTATGCATTATGTGGTGTGTATGGCATCTGCAACATTAACCGTTCTCCCAAATGTGAGTGTATGGAAGGTTTTGTGCCAAAATTCCAAAACGATTGGGACATGGCAGATTGGTCTAATGGATGTGTTCGGAGTACTCCCCTGGATTGTCAGAATGGTGAAGGTTTTGTAAAGTTCTCTGGTGTGAAACTGCCAGACACACGGAACTCCTGGTTTAATAGAAGCATGGGCCTTATGGAATGTGCCGCGGTGTGCTTGAGTAACTGCTCTTGCACTGCTTATACAAATTTGGATATAAGAGATGGAGGAAGTGGATGCTTACTCTGGTTTGGTGACTTGATTGATATCAGAGAGTTCAATGAAAATGGACAGGAGATTTATGTAAGGATGGCTGCCTCAGAATTAGGTGGTTCTAAAGAGAGTGGTAGCAACCTCAAAGGGAAGAAACGAAAGTGGATCATTGTTGGCTCTGTGTCAAGTGTGGTAATTATTCTCGTAAGCCTATTCCTGACCTTGTATCTTCTGAAGACGAAAAGGCAAAGGAAAAAAGGTAACAACCCATATTACATGCATCACTATGTTTTCAGGACAATGGGATACAATTTAGAGGTTGGACACAAGGAGGATTCAAAGTTACAATTATTTGACTTTGCTACAGTATCAAAAGCCACCAATCACTTTTCATTTGATAATAAGCTTGGAGAGGGTGGTTTTGGACTTGTATACAAGGGTATCTTGCAAGAGGGACAAGAAATAGCTGTGAAGAGACTGTCAAAAGATTCTGGTCAAGGACTTGATGAGTTAAAAAATGAAGTAATATACATCGCCAAACTTCAACACCGGAATCTCGTGAGGCTTCTTGGATGTTGCATTCATGGTGAAGAAAAGATGTTGATCTATGAGTACATGTCTAACAAAAGCCTGGATTCCTTCATTTTTGATAAAACACAAAGCATGGAACTGGATTGGAATAAGCGCTTCTTGATTATCAATGGGATTGCTCGAGGCCTTCTTTATCTTCATCAAGATTCCAGACTCAGGATAATCCATAGAGATCTAAAAGCAGGCAATATTTTGCTAGATGAGGAGATGGCTCCAAAAATTTCAGATTTTGGTATGGCTAGAAGTTTTGGAGGAAATGAAACTGAAGCAAATACAAAAAGAGTGGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATTGATGGACTATACTCAACAAAGTCAGATGTTTTTAGCTTTGGTGTTCTGGTGTTAGAGATTGTGAGTGGGAAGAGAAACAGAGGATTTTCTCACCCAGACCACTCCCTTAACCTTCTTGGGCATGCATGGACACTGTACATGGAAGGCAGGTCTATGGAGCTGATTGATTCATCAGTTGGGGACATGCATGATCTATCACAAGTGTTATGTTCGATCAATGTGGGACTCTTATGCGTACAGTGTAGTCCAGATGATAGACCAAGCATGTCTTCGGTGGTTCTGATGTTGAGTAGTGACAGTTCACTGCCTCAGCCTAAAGAGCCTGGTTTTTTCACTGGAAGGAAAGCACAGTCCTCCTCAGGCAATCAGGGGCCATTTTCAGGCAATGGGGTCACCATTACAATGTTAGATGGTCGATAG 2484 0.4255 MGALTLTLVIVFSIFRISFTVDTIALNQLLRDGEILTSAGGSFELGFFRPDNSSRRYLGMWYKKVSIRTVVWVANRETPLADSSGVLKVTDQGTLAVLNGTNTILWSSNSSRSARNPTAQILESGNLVMKDGNDDNPENFLWQSFDYPCNTLLPGMKLGRNTVTGLDRYLSAWKSADDPSKGDFTYRLDPRGYPQLILRKGSAVTFRSGPWNGVRFSGFPELGPNSIYTYEFVFNEKEMYFRYELVNSSVVSRLVLNPDGSKQRVNWIDRTNGWILYSSAPKDDCDSYALCGVYGICNINRSPKCECMEGFVPKFQNDWDMADWSNGCVRSTPLDCQNGEGFVKFSGVKLPDTRNSWFNRSMGLMECAAVCLSNCSCTAYTNLDIRDGGSGCLLWFGDLIDIREFNENGQEIYVRMAASELGGSKESGSNLKGKKRKWIIVGSVSSVVIILVSLFLTLYLLKTKRQRKKGNNPYYMHHYVFRTMGYNLEVGHKEDSKLQLFDFATVSKATNHFSFDNKLGEGGFGLVYKGILQEGQEIAVKRLSKDSGQGLDELKNEVIYIAKLQHRNLVRLLGCCIHGEEKMLIYEYMSNKSLDSFIFDKTQSMELDWNKRFLIINGIARGLLYLHQDSRLRIIHRDLKAGNILLDEEMAPKISDFGMARSFGGNETEANTKRVVGTYGYMSPEYAIDGLYSTKSDVFSFGVLVLEIVSGKRNRGFSHPDHSLNLLGHAWTLYMEGRSMELIDSSVGDMHDLSQVLCSINVGLLCVQCSPDDRPSMSSVVLMLSSDSSLPQPKEPGFFTGRKAQSSSGNQGPFSGNGVTITMLDGR* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0415 827 SUPERFAMILY Protein kinase-like (PK-like) 495 789 IPR011009 -
Vvi19g0415 827 Gene3D Transferase(Phosphotransferase) domain 1 589 794 - -
Vvi19g0415 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Vvi19g0415 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 16 145 - -
Vvi19g0415 827 ProSiteProfiles PAN/Apple domain profile. 336 417 IPR003609 -
Vvi19g0415 827 Pfam Domain of unknown function (DUF3403) 785 827 IPR021820 GO:0004674
Vvi19g0415 827 MobiDBLite consensus disorder prediction 787 819 - -
Vvi19g0415 827 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 179 IPR036426 -
Vvi19g0415 827 CDD PAN_AP_plant 332 417 - -
Vvi19g0415 827 Gene3D Hepatocyte Growth Factor 333 416 - -
Vvi19g0415 827 Pfam S-locus glycoprotein domain 206 315 IPR000858 GO:0048544
Vvi19g0415 827 Pfam D-mannose binding lectin 69 174 IPR001480 -
Vvi19g0415 827 Gene3D - 17 145 IPR036426 -
Vvi19g0415 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 335 416 - -
Vvi19g0415 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 481 588 - -
Vvi19g0415 827 Pfam Protein tyrosine and serine/threonine kinase 514 781 IPR001245 GO:0004672|GO:0006468
Vvi19g0415 827 CDD STKc_IRAK 519 784 - -
Vvi19g0415 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 589 792 - -
Vvi19g0415 827 CDD B_lectin 27 148 IPR001480 -
Vvi19g0415 827 MobiDBLite consensus disorder prediction 801 818 - -
Vvi19g0415 827 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 775 - -
Vvi19g0415 827 CDD EGF_CA 283 314 - -
Vvi19g0415 827 SMART blect_4 27 148 IPR001480 -
Vvi19g0415 827 PIRSF SRK 1 827 IPR024171 GO:0004674
Vvi19g0415 827 ProSiteProfiles Protein kinase domain profile. 513 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0415 827 Pfam PAN-like domain 336 402 IPR003609 -
Vvi19g0415 827 ProSiteProfiles Bulb-type lectin domain profile. 21 142 IPR001480 -
Vvi19g0415 827 SMART serkin_6 513 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0415 827 ProSitePatterns Protein kinases ATP-binding region signature. 519 541 IPR017441 GO:0005524
Vvi19g0415 827 Gene3D Phosphorylase Kinase; domain 1 488 588 - -
Vvi19g0415 827 SMART ntp_6 337 416 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0415 Vvi-Chr19 4555846 4559630 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0415 498 827 Receptor kinase-like Gene Family AT4G23140 53.623 2.95e-117 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0415 PK_Tyr_Ser-Thr 4.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0415 - - vvi:100246941 1621.68