Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0413 ATGGGAGTGATTCTCCTAGGCCTATCCCTGACCTGGTATGTTCTGAAGAAGAAGAAACAAAAGCGAAACGGAGAACTGGTACACAATTCAGAAGAAAACACAAATGAAGAGGAGAAGAAGGATCTAGAATTACCATTATTTGACTTGGCTACAATATTGAATGCCACCAATAACTTTTCAATTGAGAATAAGCTTGGAGAGGGTGGTTTTGGACCTGTTTACAAGGGTCTGTTGCAACAAGGGCAGGAAGTAGCTGTGAAGAGACTGTCAAAAGATTCCAGACAAGGACTTATTGAGTTCAAAACTGAAGTAATACACATTGCAAATCTTCAGCACCGAAATCTTGTGAAGCTTCTTGGATGTTGCATTCATGGCCAAGAAAAGATGCTGATCTACGAATACATGTCTAACAAAAGCTTGGAGTCCTTTATTTTTGATAAAAGGCGAAGCAAGGAACTAGATTGGCCTAAGCGCTTTCTTATTATCAATGGGATTGCTCGAGGACTTCTTTATCTTCATCAAGATTCCAGACTGAGAATAATTCATAGAGATCTAAAAGCAGACAACATTTTGCTGGATAGTGAGATGGGCCCAAAAATTTCAGACTTTGGCATAGCAAGAAGTTTTGGAGGAAATGAAACTGAAGCAAATACAACTAAAGTAGTTGGAACATTAGGTTACATATCCCCGGAGTATGCAAGTGAAGGACTGTACTCAGTAAAGTCTGATGTTTTTAGCTTTGGTGTTATGGTGCTAGAGATTGTGAGTGGGAAGAGAAACAGAGGATTTTCTCACCCAGACCACCGCCTTAACCTTCTTGGACATGCATGGACACTTTATACAGAAGGTAGGTATTTAGAGCTGATGGACGCAATGGTGGGGGACACATTCCAACCATCTGAGGTGTTGCGATCGATCCATGTGGGTCTACTATGTGTACAACATTGTGCGGATGATCGACCAAGCATGTCTTCTGTGGTTCTGATGTTGAGCAGTGAGGTTGCATTGCCTCAGCCAAGAGAGCCTGGTTTTTTCTGTGATTGGAATTCCTCAAGGAATTGCAGATCATATTCAGGCACTGAAGCCATAACACTATTAGTGGGTCGTCTGGGGAATTCGAGAAACCGATACTTGGGGATATGGTACAAGAAGTTGGCCACTGGGACTGTGGTGTGGGTTGCCAACAGAGACATCCCACTCACTGATTCATCCGGCGTTTTGAAGGTCACCGTCCAGGGAACTCTGGTTATTCTCAATGCTACTAATACCATCATCTGGTCTTCTAATGCATCACAATCTGCATCACAATCTGCACAGAATCCAACTGCCCAGCTTTTGGAGTCTGGAAATCTTGTTATGAAAAATGGGAATGACAGTGACCCGGAAAACTTCCTATGGCAAAGTTTTGATTATCCAGGCAACACTCTTCTACCAGGCATGAAGCTAGGGAGCATGGTTCAAAGTAACAGACCTGGATCGGTACCTGTCATCATGGAAGACCACTGA 1506 0.429 MGVILLGLSLTWYVLKKKKQKRNGELVHNSEENTNEEEKKDLELPLFDLATILNATNNFSIENKLGEGGFGPVYKGLLQQGQEVAVKRLSKDSRQGLIEFKTEVIHIANLQHRNLVKLLGCCIHGQEKMLIYEYMSNKSLESFIFDKRRSKELDWPKRFLIINGIARGLLYLHQDSRLRIIHRDLKADNILLDSEMGPKISDFGIARSFGGNETEANTTKVVGTLGYISPEYASEGLYSVKSDVFSFGVMVLEIVSGKRNRGFSHPDHRLNLLGHAWTLYTEGRYLELMDAMVGDTFQPSEVLRSIHVGLLCVQHCADDRPSMSSVVLMLSSEVALPQPREPGFFCDWNSSRNCRSYSGTEAITLLVGRLGNSRNRYLGIWYKKLATGTVVWVANRDIPLTDSSGVLKVTVQGTLVILNATNTIIWSSNASQSASQSAQNPTAQLLESGNLVMKNGNDSDPENFLWQSFDYPGNTLLPGMKLGSMVQSNRPGSVPVIMEDH* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0413 501 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 135 338 - -
Vvi19g0413 501 Gene3D - 350 469 IPR036426 -
Vvi19g0413 501 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 356 - -
Vvi19g0413 501 Gene3D Transferase(Phosphotransferase) domain 1 135 337 - -
Vvi19g0413 501 CDD B_lectin 370 472 IPR001480 -
Vvi19g0413 501 ProSiteProfiles Protein kinase domain profile. 59 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0413 501 Pfam D-mannose binding lectin 389 487 IPR001480 -
Vvi19g0413 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Vvi19g0413 501 SUPERFAMILY alpha-D-mannose-specific plant lectins 390 483 IPR036426 -
Vvi19g0413 501 ProSiteProfiles Bulb-type lectin domain profile. 348 466 IPR001480 -
Vvi19g0413 501 SMART serkin_6 59 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0413 501 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 134 - -
Vvi19g0413 501 SUPERFAMILY Protein kinase-like (PK-like) 43 357 IPR011009 -
Vvi19g0413 501 Gene3D Phosphorylase Kinase; domain 1 17 134 - -
Vvi19g0413 501 CDD STKc_IRAK 65 330 - -
Vvi19g0413 501 SMART blect_4 348 472 IPR001480 -
Vvi19g0413 501 Pfam Protein tyrosine and serine/threonine kinase 60 327 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0413 Vvi-Chr19 4548294 4553770 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0413 8 345 Receptor kinase-like Gene Family AT4G23140 53.333 4.82e-125 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0413 PK_Tyr_Ser-Thr 8.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0413 - - gra:105779852 555.058