Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0412 ATGACAATTCAGCAGCTAGAAGGCCAGAACGAGGATTTAAGGTTACCATTATTTGACTATGCTACCATATTAAATGCCACCAATAACTTTGGGATAGCGAACAAGGTTGGAGAGGGTGGTTTTGGACCTGTCTACAAGGGAATGTTGGAAACGGGGCAAGAAATAGCTGTGAAGAGACTGTCAAAAGATTCTAGGCAAGGACTTCATGAGTTCAAAAATGAAGTCGAATACATAGCCAAACTTCAGCACCGAAATCTAGTGAAACTTCTTGGATATTGCATTCATAACGAAGAAAAGATGTTGATTTACGAATACATGCCTAACAAAAGCTTGGACTCCTTTATTTTTGATGAAAGGCGAGGCATGGAACTAGATTGGCCTAAGCGCTGCCTCATTATCAATGGGATTGCTCGAGGACTTCTTTATCTTCATCAAGATTCTAGACTCAGAATAATCCATAGAGACCTAAATGCAGGCAACATTTTGCTAGATAGTGAGATGAGCCCAAAAATTTCAGAGTTTGGCATGGCTGAAAGTTTTGGAGCAAATCAAATTGAAGCAAATACAGAAAGATTGGTTGGAACATTCTTTGGTGTTTTGGTGCTGGAGATTGTGACTGGGAAGAGAAACAGAGGATTTTCGCACCCAGACCGCCGGCTTTGGTCAAATTGCTTCTTTCTCCACATTGACATGTTAAGACTTGATGGTCACCCTGGCAGTTCTGAGAATCGGTACCTGGGAATATGGTACAAGAAGATATCTACTGGGACAGTAGTTTGGGTGGCCGACAGAGATGTCCCATTAAACGATTCATCTGGAATTTTAAAGCTTGATGAACGGGGAACTCTAGTCCTTCTCAATAAAGCCAACATGACCATTTGGTCTTCCAATTCGTCAAGGTCAGTACAAAGCCCAGTTGCACAGCTCTTGGATACAGGAAATCTTGTTGTGAGAAATGAAAATGATAGTGACCCAGAAAACTTCCTTTGGCAAAGTTTTGATTATCCAGGGGACACTTTTCTACCAGGCATGAAGTATGGAAAGAACCTGATAACTGGCCTGGATAGTTATCTAACATCATGGAAGAGCACAGATGATCCTTCAACTGGTGATTTCACTAACAGGCTCGATCCTAGAGGATTTCCACAAATGTTTCTAAAGGAGGGTTCAGTTGTGACGTTTCGATCAGGTCCCTGGAATGGTCTTCGGTTTAGTGGTATGCCTAATTTAAAACCAAATTCAATTTATACCTTTCATTTTGTCTTGAATCAAAAGGAGATATACTACACTTATGAACTTATCAACAGCTCAGTTGTGACACGGATGGTATTGAGTCCAAATGGTGTTCTGCAGGACTACACATGGATTGATCGCAGGCAGGGCTGGCTCCTATACTTGACTGCACAGATGGATAACTGTGACCGCTATGCATTATGCGGTGCATATGGTAGTTGTGACATCAACAACTCCCCTGCATGTGGATGTTTGAAAGGCTTTGTGCCAAAACACCCAAATGATTGGAATGTTGCAGATTGGTCAGGTGGTTGTGTTCGTAGGACTCGATTGAATTGTCAAAATGGAGATGGTTTTCTGAAGTATCCTGGAGTAAAATTGCCAGACACACAAGATTCCTGGTTTAATATGACAATGAATCTTAAGGAATGCAAGATGAAGTGCTTGAAGAACTGTAATTGTACAGCTTATGCAAATTCAGATATCAGAAATGGAGGGAGTGGATGCGTGCTTTGGTTTGGCAACCTGATTGATATTAGAGAGTACAATGAAAATGGGCAAGATCTTTATGTAAGGATGGCTGCCTCAGAATTAGATAACTGGCAATGCTATGCAGAGGAATATGAAAGCTCTGACCAGAAGAAACTAGTGAAGATCATAGTCATCCCCATAGGTCTTGCAGGACTCATTCTCCTAGTCATATTTGTGATCTTGCATGTCTTGAAGAGGAAGAGACTTAAGAAGAAGGCCCCTTTGGGAGAAGGTAACTCATCTCAGATAAATACATTTTGTTCATTGATAACAATGGGGCACAATCCAGAGAGAGATCACACAAATGAAAGTGAGAAGGAAGATTTGGAGTTACCATTATTTGACTTTGACACAATAGCTGAAGCCACTGACAACTTTTCCAGAAGCAATAAACTTGGACAGGGTGGTTTTGGACCTGTTTACAAGGGTATGTTGAGAGGGGGACAAGAAATAGCTGTGAAGAGGCTCTCAAAGAATTCAAGACAAGGACTTGATGAGTTCAAGAATGAAGTTTTATGCATTGCCAAACTTCAACACCGGAACCTTGTGAAGCTTCTAGGATATTGCATTCAATATGAAGAAAAGATGCTGATCTATGAGTACATGCCCAACAAGAGCTTGAACTCCTTTATTTTTGGTATGGCTCTTTTAAAACCTTGGCATTATTTTGCTCATACAAGTTCCAAAATCATCCGACCTTTTTTTTAG 2472 0.4082 MTIQQLEGQNEDLRLPLFDYATILNATNNFGIANKVGEGGFGPVYKGMLETGQEIAVKRLSKDSRQGLHEFKNEVEYIAKLQHRNLVKLLGYCIHNEEKMLIYEYMPNKSLDSFIFDERRGMELDWPKRCLIINGIARGLLYLHQDSRLRIIHRDLNAGNILLDSEMSPKISEFGMAESFGANQIEANTERLVGTFFGVLVLEIVTGKRNRGFSHPDRRLWSNCFFLHIDMLRLDGHPGSSENRYLGIWYKKISTGTVVWVADRDVPLNDSSGILKLDERGTLVLLNKANMTIWSSNSSRSVQSPVAQLLDTGNLVVRNENDSDPENFLWQSFDYPGDTFLPGMKYGKNLITGLDSYLTSWKSTDDPSTGDFTNRLDPRGFPQMFLKEGSVVTFRSGPWNGLRFSGMPNLKPNSIYTFHFVLNQKEIYYTYELINSSVVTRMVLSPNGVLQDYTWIDRRQGWLLYLTAQMDNCDRYALCGAYGSCDINNSPACGCLKGFVPKHPNDWNVADWSGGCVRRTRLNCQNGDGFLKYPGVKLPDTQDSWFNMTMNLKECKMKCLKNCNCTAYANSDIRNGGSGCVLWFGNLIDIREYNENGQDLYVRMAASELDNWQCYAEEYESSDQKKLVKIIVIPIGLAGLILLVIFVILHVLKRKRLKKKAPLGEGNSSQINTFCSLITMGHNPERDHTNESEKEDLELPLFDFDTIAEATDNFSRSNKLGQGGFGPVYKGMLRGGQEIAVKRLSKNSRQGLDEFKNEVLCIAKLQHRNLVKLLGYCIQYEEKMLIYEYMPNKSLNSFIFGMALLKPWHYFAHTSSKIIRPFF* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0412 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 106 197 - -
Vvi19g0412 823 SUPERFAMILY alpha-D-mannose-specific plant lectins 258 367 IPR036426 -
Vvi19g0412 823 ProSiteProfiles Protein kinase domain profile. 30 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0412 823 ProSiteProfiles Bulb-type lectin domain profile. 211 330 IPR001480 -
Vvi19g0412 823 Pfam Protein tyrosine and serine/threonine kinase 33 182 IPR001245 GO:0004672|GO:0006468
Vvi19g0412 823 Pfam Protein tyrosine and serine/threonine kinase 717 799 IPR001245 GO:0004672|GO:0006468
Vvi19g0412 823 ProSiteProfiles PAN/Apple domain profile. 524 605 IPR003609 -
Vvi19g0412 823 SMART ntp_6 525 604 IPR003609 -
Vvi19g0412 823 SMART blect_4 201 336 IPR001480 -
Vvi19g0412 823 Pfam PAN-like domain 524 590 IPR003609 -
Vvi19g0412 823 CDD PAN_AP_plant 520 605 - -
Vvi19g0412 823 Gene3D Transferase(Phosphotransferase) domain 1 106 197 - -
Vvi19g0412 823 SUPERFAMILY Protein kinase-like (PK-like) 16 211 IPR011009 -
Vvi19g0412 823 CDD B_lectin 238 336 IPR001480 -
Vvi19g0412 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 105 - -
Vvi19g0412 823 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 241 808 - -
Vvi19g0412 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 679 789 - -
Vvi19g0412 823 Gene3D Phosphorylase Kinase; domain 1 3 105 - -
Vvi19g0412 823 Pfam D-mannose binding lectin 257 362 IPR001480 -
Vvi19g0412 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 523 604 - -
Vvi19g0412 823 Gene3D Hepatocyte Growth Factor 521 605 - -
Vvi19g0412 823 SUPERFAMILY Protein kinase-like (PK-like) 690 812 IPR011009 -
Vvi19g0412 823 Gene3D Phosphorylase Kinase; domain 1 687 789 - -
Vvi19g0412 823 ProSiteProfiles Protein kinase domain profile. 714 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0412 823 Gene3D - 238 333 IPR036426 -
Vvi19g0412 823 Pfam S-locus glycoprotein domain 394 502 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0412 Vvi-Chr19 4538268 4547073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0412 686 800 Receptor kinase-like Gene Family AT4G05200 56.098 5.32e-34 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0412 PK_Tyr_Ser-Thr 2.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0412 - - vvi:100258925 1073.15