Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0411 ATGGCATGCAGAGGTTACATGTCTCCAGAATACGCTGTTGATGGACACTTTTCAGTTAAATTAGATGTGTTTAGCTTTGGAGTTCTCATCCTCGAGATTTTGAGTGGCAAAAGAAATAGAGGGTTTTATCATCCTGAACATGACCTCAACCTTCTGGGACATGCATGGAAGCTATGTGGTGAAGGAAAGGCAGTGGAACTGTTGGATGCATCCTTTGGGGGTCAATTTCCTGTATCTGAAGCATTGAGATGTATCCATGTCGGTCTTTTGTGTGTGCAACAACGGCCAGAAGACTGGCCAATGATGTCATCTGTGCTTTTAATGTTGGACAGAGAGACAGCAGTGCTGCCTGAACCAAAACAACCTGGATTTTTCACAGAAAGAAGCCTTAATGAGACAGATTCTTCATCTCGAAGAAGAAAATATGCTTACTCAAATGAGGTAACTGCAACAGTAATGGAGGGTCAATGA 471 0.4268 MACRGYMSPEYAVDGHFSVKLDVFSFGVLILEILSGKRNRGFYHPEHDLNLLGHAWKLCGEGKAVELLDASFGGQFPVSEALRCIHVGLLCVQQRPEDWPMMSSVLLMLDRETAVLPEPKQPGFFTERSLNETDSSSRRRKYAYSNEVTATVMEGQ* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0411 156 SUPERFAMILY Protein kinase-like (PK-like) 4 134 IPR011009 -
Vvi19g0411 156 Gene3D Transferase(Phosphotransferase) domain 1 1 123 - -
Vvi19g0411 156 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 4 155 - -
Vvi19g0411 156 Pfam Domain of unknown function (DUF3403) 112 155 IPR021820 GO:0004674
Vvi19g0411 156 Pfam Protein tyrosine and serine/threonine kinase 6 39 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0411 Vvi-Chr19 4533592 4534146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0411 5 138 Receptor kinase-like Gene Family AT4G11530 48.936 5.96e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0411 DUF3403 9.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0411 - - mnt:21411363 212.231