Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0410 ATGGCTTGGCAAATGCAGCTTGACATTGTTATGGGAGTTTCAAGAGGACTTCTTTACCTCCACCAAGACTTCAGATTGTGGGTCATTCATAGAGACCTCAAAACCTGCAATATATTACTTGACGGTGAGCTGAGCCCCAAAATTTCAGTTTTCAGCCTCACAAGAATTTTTGGAGGACATCAAACTGAAGCAAAAACAAATGGATATATGTCTCCAGAGTATGGAATTGATGGCAAATTTTCAGCGAAATCAGATGTCTTCGGTTTTGGTGTGCTTCTGTTGGAGATAGTAAGTGGCAAAAAGAACAGGGGATTTAGTCATCCACATCACCACCACAATCTTTTGGGACATGCATGGATGCTTTGGAATGAAGACAAGGCCTTGGAACTGATGGATGCATGTCTCAGGGATTCATGTGTTGAGTCTCAAGTCCCAAGATGTATTCAAGTGGACTTATTTTGTGTTCAAAAACTCCCAGCCAACAGGCCAACCATATCATCGGTAATTTTCACGTTGGGTCATGAGGAAGCAGTGTTGCCTCAACCTAAACAGCCCGGTTTCTTCAGAGAAAGAAGTTCCGTTGATGATGAAGATGCCATACAGAAAATGAAATTACTGGAAAACCCAATTGAGGGTTCATATGGGGTTCTAAGTATTGGAAATGATGGCAATCTAGCTCTCCTCAACAAAACAAAGGGCATTATCTGGTCATCAAGTTCTTCGAGAGGGGCTGAAAATCCAACTGCACAGCTATTAGAGACTGGAAATCTTGTTCTTAGAGACGAGAGTGATGTAGATCCAGAGATCTATACATGGCAAAGCTTCGATTTCCCCTGTGACACACTGCTTGCAGGCATGAAGTTTGGATGGAACTTGAAAGATGGCCAAAATCGATATCTAACGTCTTGGAGAAACGCCAGTGACCCAGCACCCGGAGACTTCACTTGGCGAATCGACATTGTTGGGTTACCTCAAATGGTTCTTAGGAAGGGATCAGAGAAGATGTTCCGTAGTGGGCCATGGAATGGATTAAGTTTTAATGGTCTTCCATTGATTAAGAAGACATTTTTTACATCTTCTTTGGTGGACAATGCAGATGAGTTCTACTATTCGTACGAGCTTGACGACAAATCGATTATAACAAGACTTACTCTGGATGAACTGGGAATCTACCAGCGCCTGGTGTTGAGCAAAACCAGCAAGAAGTGGGATATTGTGTATCCACTGCAGGATGATTTGTGCGATGACTATGGCCGCTGTGGTGCTAACAGCATTTGCAGAATTAACGATCGGCCTATTTGTGAGTGCTTGGAAGGGTTTGTTCCAAAATCACAGGAGGAATGGGAATTTCAAAATTGGACCAGTGGCTGCATTAGGAGGACACAGTTGGACTGCCAAAAGGGAGAAGGATTTATGGAACTTGAAGGGGTCAAACTGCCTGACCTGTTGGAATTCTGGGTGAGCAAGAGCATGACCCTTAAGGAATGTGAGGAGGAGTGCTTGAGGAACTGTTCTTGCACAGCTTACACTAATTCAAATATTAGTGAGGGAGGCAGTGGTTGCTTGATCTGGTTTAGGGATCTGATCGATATCCGAGAGTTCCATGAAGATAATAAGCAGAATATCTACATCCGAATGCCAGCTTCAGAACTAGAGTTGATGAATGGTTCCAGTCAAAGCAAGAAACGCTTGGTGGTTGTGGTGGTCTCATCTACTGCTTCTGGAGTTTTCATCTTGGGCTTGGTACTCTGGTTTATAGTTCGGAAGAGAAAGAAAAGAGGTTCAGAAACAGAAAAGGAAGACCTGGAGCTGCAGTTGTTTGATCTGGCTACTATTTCAAGTGCTACTAATAACTTCTCTGATTCAAATTTGATTGGGAAGGGTGGTTTTGGACCAGTTTACAAGGGTACCCTGGCATCAGGACAAGAAATTGCAGTAAAAAGGCTTTCAAACAATTCAGGACAAGGCTTTCAAGAGTTCAAGAATGAAGTTATTTTGATTGCCAAACTTCAACATCGCAATCTTGTGAGGCTTTTGGGCTATTGCGTTGAAGAAGAAAGAATGCTGGTCTATGAATATATGCCCAACAAAAGCTTGGACTGTTTTATTTTTGATCAGGAAAGAAGCATGCTACTGAATTGGCCAAGGCGATTTGACATTGTCATGGGAGTTGCTCGTGGACTCCTTTATCTCCACCAAGACTCTAGATTGAGAATCATCCATAGAGATCTCAAAACCAGTAATATATTACTTGACAGTGAGCTAAACCCCAAAATTTCAGACTTTGGCATAGCAAGAGTTTTTGGGGGACAACAAACGGAAGCAAAAACAAAGCTAGTAATTGGAACATATGGCTATATGTCTCCAGAGTATGCAATTGATGGCAAATTCTCAGTAAAATCCGACGTCTTCAGTTTTGGTGTGCTTTTGTTGGAGATAGTGAGTAGCAAAAAGAACAGGGGGTTTTGTCATCCAGATCACCACCACAATCTTTTGGGACATGCATGGCTGCTTTGGAATGAACGCAAGACCATGGAACTGATGGATGCAGGCCTGAAGGATTCATGCATTGAGTCTCAAGTACTAAGATGCATTCAAGTGGGCTTATTATGTGTTCAGAAACTCCCAGTAGACAGGCCAACAATGTCATCTATAATTTTCATGTTGGGTAATGAGGAAGCAACATTGCCTCAACCTAAACAGCCCGGTTTCTTCTTTGAAAGAAGCTCTGAAGGAGATGACAAAGGATGTTACACAGAAAATACAGTTACTCTGACAATTCTTGAAGCTAGATAG 2796 0.4238 MAWQMQLDIVMGVSRGLLYLHQDFRLWVIHRDLKTCNILLDGELSPKISVFSLTRIFGGHQTEAKTNGYMSPEYGIDGKFSAKSDVFGFGVLLLEIVSGKKNRGFSHPHHHHNLLGHAWMLWNEDKALELMDACLRDSCVESQVPRCIQVDLFCVQKLPANRPTISSVIFTLGHEEAVLPQPKQPGFFRERSSVDDEDAIQKMKLLENPIEGSYGVLSIGNDGNLALLNKTKGIIWSSSSSRGAENPTAQLLETGNLVLRDESDVDPEIYTWQSFDFPCDTLLAGMKFGWNLKDGQNRYLTSWRNASDPAPGDFTWRIDIVGLPQMVLRKGSEKMFRSGPWNGLSFNGLPLIKKTFFTSSLVDNADEFYYSYELDDKSIITRLTLDELGIYQRLVLSKTSKKWDIVYPLQDDLCDDYGRCGANSICRINDRPICECLEGFVPKSQEEWEFQNWTSGCIRRTQLDCQKGEGFMELEGVKLPDLLEFWVSKSMTLKECEEECLRNCSCTAYTNSNISEGGSGCLIWFRDLIDIREFHEDNKQNIYIRMPASELELMNGSSQSKKRLVVVVVSSTASGVFILGLVLWFIVRKRKKRGSETEKEDLELQLFDLATISSATNNFSDSNLIGKGGFGPVYKGTLASGQEIAVKRLSNNSGQGFQEFKNEVILIAKLQHRNLVRLLGYCVEEERMLVYEYMPNKSLDCFIFDQERSMLLNWPRRFDIVMGVARGLLYLHQDSRLRIIHRDLKTSNILLDSELNPKISDFGIARVFGGQQTEAKTKLVIGTYGYMSPEYAIDGKFSVKSDVFSFGVLLLEIVSSKKNRGFCHPDHHHNLLGHAWLLWNERKTMELMDAGLKDSCIESQVLRCIQVGLLCVQKLPVDRPTMSSIIFMLGNEEATLPQPKQPGFFFERSSEGDDKGCYTENTVTLTILEAR* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0410 931 Gene3D Transferase(Phosphotransferase) domain 1 694 900 - -
Vvi19g0410 931 Gene3D Transferase(Phosphotransferase) domain 1 1 180 - -
Vvi19g0410 931 SUPERFAMILY alpha-D-mannose-specific plant lectins 207 309 IPR036426 -
Vvi19g0410 931 SUPERFAMILY Protein kinase-like (PK-like) 602 889 IPR011009 -
Vvi19g0410 931 Pfam S-locus glycoprotein domain 336 444 IPR000858 GO:0048544
Vvi19g0410 931 ProSitePatterns Serine/Threonine protein kinases active-site signature. 739 751 IPR008271 GO:0004672|GO:0006468
Vvi19g0410 931 ProSiteProfiles Bulb-type lectin domain profile. 149 272 IPR001480 -
Vvi19g0410 931 CDD PAN_AP_plant 461 547 - -
Vvi19g0410 931 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 269 910 - -
Vvi19g0410 931 CDD STKc_IRAK 625 889 - -
Vvi19g0410 931 Gene3D - 195 275 IPR036426 -
Vvi19g0410 931 ProSiteProfiles Protein kinase domain profile. 619 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0410 931 SMART serkin_6 619 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0410 931 ProSitePatterns Serine/Threonine protein kinases active-site signature. 28 40 IPR008271 GO:0004672|GO:0006468
Vvi19g0410 931 Gene3D Hepatocyte Growth Factor 462 548 - -
Vvi19g0410 931 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 694 785 - -
Vvi19g0410 931 FunFam - 1 180 - -
Vvi19g0410 931 SMART ntp_6 466 546 IPR003609 -
Vvi19g0410 931 FunFam Uncharacterized protein 195 276 - -
Vvi19g0410 931 Pfam D-mannose binding lectin 207 304 IPR001480 -
Vvi19g0410 931 Gene3D Phosphorylase Kinase; domain 1 583 693 - -
Vvi19g0410 931 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 585 693 - -
Vvi19g0410 931 FunFam Uncharacterized protein 787 898 - -
Vvi19g0410 931 Pfam PAN-like domain 465 531 IPR003609 -
Vvi19g0410 931 Pfam Domain of unknown function (DUF3403) 891 931 IPR021820 GO:0004674
Vvi19g0410 931 Pfam Protein tyrosine and serine/threonine kinase 4 169 IPR001245 GO:0004672|GO:0006468
Vvi19g0410 931 Pfam Protein tyrosine and serine/threonine kinase 623 886 IPR001245 GO:0004672|GO:0006468
Vvi19g0410 931 SMART blect_4 167 278 IPR001480 -
Vvi19g0410 931 ProSiteProfiles Protein kinase domain profile. 1 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0410 931 SUPERFAMILY Protein kinase-like (PK-like) 3 171 IPR011009 -
Vvi19g0410 931 ProSiteProfiles PAN/Apple domain profile. 465 547 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0410 Vvi-Chr19 4516228 4525579 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0410 579 907 Receptor kinase-like Gene Family AT4G23140 54.783 5.00e-127 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0410 PK_Tyr_Ser-Thr 3.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0410 - - vvi:100265866 1014.6