Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0409 ATGACAAACCAGGCTTTTAAAACTTCTTTTGTATACAATGAAGATGAAGCATACTATCTGTATGAGCTTAAAGATAATTTAAGTATAACAAGACTGACGCTGAATGAACTGGGTTCAATCAATCGCTTTGTATTGAGCGAAAGTAGCACTGAGTGGGCCATAATGTATACAGTACAGAATGACCTGTGCGACAATTATGGACACTGTGGTGCTAATGGCTTTTGCAGAATAGGAAACACACCAATTTGTGAGTGCTTGGATGGCTTTGTTCCAAAGTCACAGAATGAATGGGAGTTTCTGAATTGGACCAGCGGATGCATTAGGAGCACTCCATTGGATTGCCAAAAAGGAGAAGGGTTTATAGAAGTTAAAGGTGTGAAATTGCCTGACCTGTTGGATTTTTGGGTAAACAAGAGGACGACCCTTAGGGAGTGTAGGGCTGAGTGCTTGAAGAACTGTTCTTGCACCGCTTATGCTAATTCAAATATTAGCAAAGGAGGCAGCGGCTGCTTGATGTGGTTTGGCAATTTGATTGATGTCCGTGAATTCCACGCCCAGGAGAGTGAGCAAACGGTCTATGTCAGAATGCCAGCCTCAGAACTAGAATCAAGGCGCAACTCCAGTCAAAAGAGGAAACATCTGGTGATTGTGGTGCTTGTATCCATGGCTTCTGTAGTGCTCATTTTGGGTTTGGGCACGCTGGGAACTGGACAGGAAATAGCAGTGAAGAGGCTTTCAAATAATTCTGGACAAGGACTTCAAGAGTTCAAGAATGAAGTTATTTTGATTTCCAGACTTCAACACCGTAATCTAGTTAGGCTTTTGGGTTGTTGCATTGAAAGGGAAGAAAGGATGCTAATCTATGAGTATATGCCCAACAGAAGCTTGGACTACTTTATTTTTGACCAGATGAGACGTGTCTTACTGCCTTGGCAAAAGCGCTTGGACATTATCCTGGGAATTGCACGAGGTCTTCTTTACCTCCACCAAGACTCCAGATTGAGAATCATTCATAGAGATCTCAAAACCAGCAATATCTTACTAGACAGCGAGCTGACCCCAAAAATTTCAGACTTTGGCATAGCGAGAATTTTTGGAGGAGATCAAATTGAAGCCAAAACAAAGCGAGTAATTGGAACGTATGGTTATATGTCTCCAGAGTATGCAGTTGATGGTCAATTTTCAGTGAAATCTGATGTCTTCAGTTTGGGTGTGCTTTTGTTAGAGATAGTAAGTGGCAAAAAGAACAGGGGATTTTGTCATCCAGATCACTACCACAATCTTTTGGGACATGTGTGGTTACTGTGGAATGAAAACAGAGCCTTGGAACTGATGGAGCCATGTTTGGTGGACTCATATGTTGAATCTCAAGTACTAAGATGCATTCAAGTTGGTCTACTATGCATCCAAAAACTCCCAGAAGACAGGCCATCAATGTCATCAGTGGTCTTAATGTTGGTTAATGAGGAAATAACATTGCCTCAACCCTAG 1491 0.4192 MTNQAFKTSFVYNEDEAYYLYELKDNLSITRLTLNELGSINRFVLSESSTEWAIMYTVQNDLCDNYGHCGANGFCRIGNTPICECLDGFVPKSQNEWEFLNWTSGCIRSTPLDCQKGEGFIEVKGVKLPDLLDFWVNKRTTLRECRAECLKNCSCTAYANSNISKGGSGCLMWFGNLIDVREFHAQESEQTVYVRMPASELESRRNSSQKRKHLVIVVLVSMASVVLILGLGTLGTGQEIAVKRLSNNSGQGLQEFKNEVILISRLQHRNLVRLLGCCIEREERMLIYEYMPNRSLDYFIFDQMRRVLLPWQKRLDIILGIARGLLYLHQDSRLRIIHRDLKTSNILLDSELTPKISDFGIARIFGGDQIEAKTKRVIGTYGYMSPEYAVDGQFSVKSDVFSLGVLLLEIVSGKKNRGFCHPDHYHNLLGHVWLLWNENRALELMEPCLVDSYVESQVLRCIQVGLLCIQKLPEDRPSMSSVVLMLVNEEITLPQP* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0409 496 CDD PAN_AP_plant 110 197 - -
Vvi19g0409 496 CDD STKc_IRAK 232 486 - -
Vvi19g0409 496 SMART serkin_6 214 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0409 496 SMART ntp_6 115 196 IPR003609 -
Vvi19g0409 496 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 55 228 - -
Vvi19g0409 496 ProSiteProfiles Protein kinase domain profile. 223 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0409 496 Gene3D Phosphorylase Kinase; domain 1 205 290 - -
Vvi19g0409 496 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 291 382 - -
Vvi19g0409 496 Pfam S-locus glycoprotein domain 3 93 IPR000858 GO:0048544
Vvi19g0409 496 Pfam Protein tyrosine and serine/threonine kinase 236 484 IPR001245 GO:0004672|GO:0006468
Vvi19g0409 496 Gene3D Hepatocyte Growth Factor 111 197 - -
Vvi19g0409 496 SUPERFAMILY Protein kinase-like (PK-like) 231 486 IPR011009 -
Vvi19g0409 496 FunFam Cysteine-rich receptor-like protein kinase 11 206 290 - -
Vvi19g0409 496 ProSiteProfiles PAN/Apple domain profile. 114 198 IPR003609 -
Vvi19g0409 496 FunFam Uncharacterized protein 384 495 - -
Vvi19g0409 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 336 348 IPR008271 GO:0004672|GO:0006468
Vvi19g0409 496 Pfam PAN-like domain 114 180 IPR003609 -
Vvi19g0409 496 Gene3D Transferase(Phosphotransferase) domain 1 291 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0409 Vvi-Chr19 4507989 4510361 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0409 232 496 Receptor kinase-like Gene Family AT4G23230 58.491 4.69e-114 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g0409 PK_Tyr_Ser-Thr 7.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0409 - - qsu:111992231 698.353